View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_8 (Length: 391)
Name: NF4523_high_8
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 30088441 - 30088801
Alignment:
| Q |
15 |
cataggtgtacaccagtttcttctatgattgctttgatgcttcttgttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaatggtgga |
114 |
Q |
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| T |
30088441 |
cataggtgtacactagtttcttctgtgattgctttgatgcttcttgttgatcatgatcatcaagtactagtgtttttgattttaaggaatgaatggtgga |
30088540 |
T |
|
| Q |
115 |
tttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaat |
214 |
Q |
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| T |
30088541 |
tttgaaccaatcatgatgatttgtgaagacttgaggaaagaaggatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaat |
30088640 |
T |
|
| Q |
215 |
agaagccaaagagaaattatgagaagaagttaaaactc--agttaggctccattgattatttttgcaaataaacaaagaaatgttgttttggctcttgat |
312 |
Q |
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| T |
30088641 |
agaagccaaagagaaattatgagaagaagtgaaaactcaaagttaggctccattgattatttttgccaataaacaaagaaatgttgttttggctcttgat |
30088740 |
T |
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| Q |
313 |
tcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcatga |
373 |
Q |
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| T |
30088741 |
tcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcatga |
30088801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 30092399 - 30092759
Alignment:
| Q |
15 |
cataggtgtacaccagtttcttctatgattgctttgatgcttc---ttgttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaatggt |
111 |
Q |
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| T |
30092399 |
cataggtgtatactagttgcttctgtgattgcattgatgcttcttcttgttgatcatgatcatcaagcactaatgtttttgattttaaggaatgaatggt |
30092498 |
T |
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| Q |
112 |
ggatttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtt |
211 |
Q |
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| T |
30092499 |
agatttgaaccaatcatgatgatttgtgaagacttgaggaaagaaggatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtt |
30092598 |
T |
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| Q |
212 |
aatagaagccaaagagaaattatgagaagaagttaaaac--tcagttaggctccattgattatttttgcaaataaacaaagaaatgttgttttggctctt |
309 |
Q |
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| T |
30092599 |
aatagaagccaaagagaaattatgagaagaagtgaaaacataaagttaggctccattggttatttttgcaactaaacaaagaaatgttgttttggctatt |
30092698 |
T |
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| Q |
310 |
gattcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcat |
371 |
Q |
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| T |
30092699 |
gattcctctta-catgtgattatataggatttttagagaatatcaatgatgtagacattcat |
30092759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 30098467 - 30098146
Alignment:
| Q |
15 |
cataggtgtacaccagtttcttctatgattgctttgatgcttcttgttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaatggtgga |
114 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| | |||| | ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
30098467 |
cataggtgtacaccagtttcttctgtgattgctttgatgctt------ggtcataatcatcaggtactaatgtttttgattttaaggaatgaatggtgga |
30098374 |
T |
|
| Q |
115 |
tttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098373 |
tttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaat |
30098274 |
T |
|
| Q |
215 |
agaagccaaagagaaattatgagaagaagttaaaactca--gttaggctccattga--ttatttttgcaaataaacaaagaaatgttgttttggctcttg |
310 |
Q |
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|||| ||||||||||||||||||||||||| ||||| || ||||||||||||||| || |||||||| |||||||||||||| | |||| ||||||| |
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| T |
30098273 |
agaaaccaaagagaaattatgagaagaagtgaaaacacattgttaggctccattgattttttttttgcatgtaaacaaagaaatggtttttttgctcttg |
30098174 |
T |
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| Q |
311 |
attcctcttatcatgcgattctatagga |
338 |
Q |
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||| || |||||||| || | ||||||| |
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| T |
30098173 |
atttctattatcatgtgactatatagga |
30098146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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