View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_11 (Length: 410)
Name: NF4523_low_11
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 12550581 - 12550203
Alignment:
| Q |
22 |
caagcaacattaataattgcaccacttgattatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
121 |
Q |
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| T |
12550581 |
caagcaacattaataattgcaccacttgatcatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
12550482 |
T |
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| Q |
122 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
221 |
Q |
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| T |
12550481 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
12550382 |
T |
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| Q |
222 |
gcatgcatcggatacattgttattaccaaccaacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgtt |
321 |
Q |
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| T |
12550381 |
gcatgcatcgaatacattgttattaccaaccaacctctgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgtt |
12550282 |
T |
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| Q |
322 |
gtcttcattgtagggttaaccttaatcacacctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
400 |
Q |
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| T |
12550281 |
gtcttcattgtagggttaaccttaatcacacctttttcattcagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 9462293 - 9462194
Alignment:
| Q |
22 |
caagcaacattaataattgcaccacttgattatttgttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
115 |
Q |
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| T |
9462293 |
caagcaacattaataattgttcaagttgattatttgttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
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