View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4523_low_13 (Length: 377)

Name: NF4523_low_13
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4523_low_13
NF4523_low_13
[»] chr7 (3 HSPs)
chr7 (126-361)||(43863267-43863505)
chr7 (154-199)||(9179981-9180026)
chr7 (167-199)||(727621-727653)
[»] chr8 (3 HSPs)
chr8 (167-200)||(18306028-18306061)
chr8 (154-199)||(41479204-41479249)
chr8 (167-199)||(32497632-32497664)
[»] chr3 (2 HSPs)
chr3 (162-199)||(52080033-52080070)
chr3 (167-199)||(44276491-44276523)
[»] chr1 (1 HSPs)
chr1 (154-199)||(33025613-33025658)
[»] chr6 (2 HSPs)
chr6 (167-199)||(30385124-30385156)
chr6 (167-199)||(31067599-31067631)
[»] chr4 (4 HSPs)
chr4 (167-199)||(12913330-12913362)
chr4 (167-199)||(30967367-30967399)
chr4 (167-199)||(31314800-31314832)
chr4 (167-199)||(56445413-56445445)
[»] chr2 (1 HSPs)
chr2 (167-199)||(13833492-13833524)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 126 - 361
Target Start/End: Complemental strand, 43863505 - 43863267
Alignment:
Q  126 caattatcagaaatctcatgttttcatgaaaaatttattaaaaaatcccacaaaatctaatttattaaacaatctcatgttaggagtacgtaaaa---cc 222  Q
    ||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| || |||||||||||||||||||||||| ||||| |||  |   ||    
T  43863505 caattctcagaaatctcatgttttcatggaaaaatcattaaaaaattccacaaattccaatttattaaacaatctcatgttatgagtatgtagtagtacc 43863406  T
Q  223 ttatgtttggctttgatcttccctcttttggagaattctctgtttcctttatccgcatgtgctttctctcctcctcataacgtgcctttgtgcctattgt 322  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43863405 ttatgtttggctttgatcttccctcttttggggaattctctgcatcctttatccgcatgtgctttctctcctcctcataacgtgcctttgtgcctattgt 43863306  T
Q  323 cgttttagttactggcactataaaatgaaaaacaagtaa 361  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43863305 cgttttagttactggcactataaaatgaaaaacaagtaa 43863267  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 9180026 - 9179981
Alignment:
Q  154 aaaaatttattaaaaaatcccacaaaatctaatttattaaacaatc 199  Q
    ||||||| | || |||||||||||||||| ||||||||||||||||    
T  9180026 aaaaattcactagaaaatcccacaaaatccaatttattaaacaatc 9179981  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 727653 - 727621
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    ||||||||||||||||| |||||||||||||||    
T  727653 aaaatcccacaaaatctgatttattaaacaatc 727621  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 18306028 - 18306061
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatct 200  Q
    |||||||||||||||| |||||||||||||||||    
T  18306028 aaaatcccacaaaatccaatttattaaacaatct 18306061  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 41479249 - 41479204
Alignment:
Q  154 aaaaatttattaaaaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||| |||| || ||||||||||||||||| |||||||||||||||    
T  41479249 aaaattttactagaaaatcccacaaaatctgatttattaaacaatc 41479204  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 32497664 - 32497632
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  32497664 aaaatcccacaaaatccaatttattaaacaatc 32497632  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 52080070 - 52080033
Alignment:
Q  162 attaaaaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  52080070 attagaaaatcccacaaaatctgatttattaaacaatc 52080033  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 44276523 - 44276491
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  44276523 aaaatcccacaaaatccaatttattaaacaatc 44276491  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 33025658 - 33025613
Alignment:
Q  154 aaaaatttattaaaaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||| ||||||| ||||||||||||||||| || ||||||||||||    
T  33025658 aaaattttattagaaaatcccacaaaatctgatgtattaaacaatc 33025613  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 30385124 - 30385156
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  30385124 aaaatcccacaaaatccaatttattaaacaatc 30385156  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 31067631 - 31067599
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  31067631 aaaatcccacaaaatccaatttattaaacaatc 31067599  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 12913362 - 12913330
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  12913362 aaaatcccacaaaatccaatttattaaacaatc 12913330  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 30967367 - 30967399
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  30967367 aaaatcccacaaaatccaatttattaaacaatc 30967399  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 31314800 - 31314832
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    ||||||||||||||||| |||||||||||||||    
T  31314800 aaaatcccacaaaatctgatttattaaacaatc 31314832  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 56445413 - 56445445
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  56445413 aaaatcccacaaaatccaatttattaaacaatc 56445445  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 13833492 - 13833524
Alignment:
Q  167 aaaatcccacaaaatctaatttattaaacaatc 199  Q
    |||||||||||||||| ||||||||||||||||    
T  13833492 aaaatcccacaaaatccaatttattaaacaatc 13833524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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