View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4523_low_17 (Length: 320)

Name: NF4523_low_17
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4523_low_17
NF4523_low_17
[»] chr2 (1 HSPs)
chr2 (16-303)||(42206080-42206367)
[»] chr6 (3 HSPs)
chr6 (23-173)||(13587595-13587745)
chr6 (53-98)||(6372991-6373036)
chr6 (30-122)||(27598164-27598256)
[»] chr4 (4 HSPs)
chr4 (23-179)||(21001329-21001484)
chr4 (86-181)||(18910003-18910098)
chr4 (139-182)||(39992134-39992177)
chr4 (30-179)||(51079075-51079224)
[»] chr7 (5 HSPs)
chr7 (24-184)||(8227474-8227634)
chr7 (92-180)||(8235063-8235151)
chr7 (83-179)||(23681833-23681929)
chr7 (104-181)||(2685939-2686016)
chr7 (83-168)||(47873004-47873089)
[»] chr3 (4 HSPs)
chr3 (16-166)||(40285362-40285512)
chr3 (83-177)||(13774416-13774510)
chr3 (146-180)||(36418200-36418234)
chr3 (102-179)||(45466467-45466544)
[»] chr5 (4 HSPs)
chr5 (30-99)||(8939838-8939907)
chr5 (142-179)||(6061452-6061489)
chr5 (142-179)||(6058546-6058583)
chr5 (83-180)||(8073671-8073768)
[»] chr8 (1 HSPs)
chr8 (30-178)||(29264562-29264710)
[»] chr1 (1 HSPs)
chr1 (30-122)||(41625496-41625588)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 42206080 - 42206367
Alignment:
Q  16 cacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206080 cacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatga 42206179  T
Q  116 tctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccatataacccttatttagattttgggtataatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206180 tctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccatataacccttatttagattttgggtataatag 42206279  T
Q  216 ttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaattggtaaccaatgatattctgtg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206280 ttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaattggtaaccaatgatattctgtg 42206367  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 13587595 - 13587745
Alignment:
Q  23 gacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatg 122  Q
    ||||||| |||||||||||||| |||||| ||||||||| | ||||||||| || |||  ||||||| ||||||||| || |||||||||||||  ||||    
T  13587595 gacatatatcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaatatgacgagatttaatgattcaatg 13587694  T
Q  123 ctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatatta 173  Q
    ||  |||| || |||| |||| |||||||||||||||||||| ||||||||    
T  13587695 ctagaaaataagtttgcgcatagtacaatactaatttgtttgcgcatatta 13587745  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 6372991 - 6373036
Alignment:
Q  53 tttctaccaatagatcaataagtcgcaccgttaaattaaatgaaat 98  Q
    ||||||||| | |||||||||||| | |||||||||||||||||||    
T  6372991 tttctaccattggatcaataagtctcgccgttaaattaaatgaaat 6373036  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 27598164 - 27598256
Alignment:
Q  30 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatg 122  Q
    |||||||||||||||||| ||  ||| ||||| | |||||||||| | ||   ||||||||||||||||| |  |||||||| ||||| ||||    
T  27598164 gtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttattgatccaatg 27598256  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 21001484 - 21001329
Alignment:
Q  23 gacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatg 122  Q
    ||||||||||||||||||| ||||||||| ||| ||||||| |||||| |||||   |  |||||||||||| |||| || |||||||||||||| || |    
T  21001484 gacatatgtcttgcaccattcacaaggttgtttttaccaatggatcaacaagtcag-ctattaaattaaatgtaatatgatgagatttaatgatccaacg 21001386  T
Q  123 ctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 179  Q
     || |||||||  ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  21001385 gtggaaaacaagcttgtgcatggtgcaatactaatttgcttgcgcacattagacaaa 21001329  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 18910003 - 18910098
Alignment:
Q  86 aattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 181  Q
    ||||||||||||||| | |||||||||||||  |||| | ||||| || |||||| ||| ||||| ||||| ||||||||| ||||||||||||||    
T  18910003 aattaaatgaaatacaatgagatttaatgattaaatggtaaaaaataagtttgtgtatgatacaagactaacttgtttgtgtatattagacaaaac 18910098  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 39992134 - 39992177
Alignment:
Q  139 tgcatggtacaatactaatttgtttgtgcatattagacaaaacc 182  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  39992134 tgcatggtgcaatactaatttatttgtgtatattagacaaaacc 39992177  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 51079075 - 51079224
Alignment:
Q  30 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaa 129  Q
    |||||||||||||||||||||| |||| || | | ||||||||| |  |||  |||| || ||| ||||| || |||||||| |||||   || |  |||    
T  51079075 gtcttgcaccatgcacaaggttgtttccactattggatcaataaattccactattaagtttaataaaataggatgagatttattgatcctgtggtagaaa 51079174  T
Q  130 acaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 179  Q
    ||| | || |||||||| ||| | |||||||||||||||| | |||||||    
T  51079175 acagacttttgcatggtgcaagagtaatttgtttgtgcatgtaagacaaa 51079224  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 8227474 - 8227634
Alignment:
Q  24 acatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatgc 123  Q
    ||||||| ||||||||||  |||| ||| |||| | || | ||||||||| || ||   || |||||||||||||| || ||||||||| |||  ||||     
T  8227474 acatatgccttgcaccatatacaaagttatttcaatcatttgatcaataaatctcattatttaattaaatgaaatatgatgagatttaacgatacaatgg 8227573  T
Q  124 tgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccat 184  Q
    || |||| || ||||||| |||||||| |||||||||  |||||| |||||||||||||||    
T  8227574 tggaaaataagtttgtgcgtggtacaaaactaatttgcgtgtgcacattagacaaaaccat 8227634  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 8235063 - 8235151
Alignment:
Q  92 atgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 180  Q
    |||||||| || || |||||||||||||||| ||||||| || |||||| |||||||||| |||||||| || || | |||||||||||    
T  8235063 atgaaatatgatgaaatttaatgatctaatggtgaaaaataagtttgtgtatggtacaattctaatttgcttttgtacattagacaaaa 8235151  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 23681833 - 23681929
Alignment:
Q  83 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 179  Q
    |||||| |||||||||| || || ||||||||||| |||  ||||||| ||||||||| ||||| |||||  ||||| |||||||| ||||||||||    
T  23681833 ttaaatcaaatgaaatatgatgacatttaatgatcaaatagtgaaaaataaatttgtgtatggtgcaataaaaatttatttgtgcacattagacaaa 23681929  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 2686016 - 2685939
Alignment:
Q  104 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 181  Q
    ||||||||||||||| ||| |||||||||||||| |  ||| | |||||||||||||||||||||  ||| |||||||    
T  2686016 gagatttaatgatctgatggtgaaaaacaaatttatagatgattcaatactaatttgtttgtgcacgttaaacaaaac 2685939  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 47873004 - 47873089
Alignment:
Q  83 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgca 168  Q
    ||||||||||||||||| || |||||||||||||  ||   || |||| || ||||||| |||| |||||| ||||||||||||||    
T  47873004 ttaaattaaatgaaatatgatgagatttaatgatacaacagtggaaaataagtttgtgcttggtgcaataccaatttgtttgtgca 47873089  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 40285512 - 40285362
Alignment:
Q  16 cacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatga 115  Q
    ||||| ||||||||| |||||||||||||||| ||| ||| ||| | | |||||||||||| |||  ||||||| ||| |||||  | ||||||||||||    
T  40285512 cacaagagacatatgacttgcaccatgcacaaagttgtttatacaatttgatcaataagtctcactattaaattgaataaaatataacgagatttaatga 40285413  T
Q  116 tctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtg 166  Q
    ||||||  || |||| ||| ||||  ||||| || ||||| |||| |||||    
T  40285412 tctaattttggaaaataaacttgtatatggtgcagtactattttgcttgtg 40285362  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 13774510 - 13774416
Alignment:
Q  83 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagaca 177  Q
    ||||||||||||||||| |  |||||| ||| ||| |||  || |||| ||  |||||| |||| ||||| ||||||||||||||| ||||||||    
T  13774510 ttaaattaaatgaaatatggtgagattaaattatccaatagtggaaaataagcttgtgcgtggtgcaataataatttgtttgtgcaaattagaca 13774416  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 36418200 - 36418234
Alignment:
Q  146 tacaatactaatttgtttgtgcatattagacaaaa 180  Q
    |||||||||||||| ||||||||||||||||||||    
T  36418200 tacaatactaatttttttgtgcatattagacaaaa 36418234  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 45466544 - 45466467
Alignment:
Q  102 aagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 179  Q
    ||||||| |||||||| |||| | ||||  ||  || |||||| | |||||||||||||||||||| |||||||||||    
T  45466544 aagagatataatgatccaatgataaaaattaagcttctgcatgttgcaatactaatttgtttgtgcgtattagacaaa 45466467  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 8939838 - 8939907
Alignment:
Q  30 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaata 99  Q
    |||||||||||||||||| ||| |||| |||| | |||||||||||  |||||||||||||| |||||||    
T  8939838 gtcttgcaccatgcacaaagttgtttccaccattggatcaataagtttcaccgttaaattaattgaaata 8939907  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 6061489 - 6061452
Alignment:
Q  142 atggtacaatactaatttgtttgtgcatattagacaaa 179  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6061489 atggtgcaatactaatttgtttgtgcatattagacaaa 6061452  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 6058583 - 6058546
Alignment:
Q  142 atggtacaatactaatttgtttgtgcatattagacaaa 179  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  6058583 atggtgcaatcctaatttgtttgtgcatattagacaaa 6058546  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 8073671 - 8073768
Alignment:
Q  83 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 180  Q
    ||||||||||||||||| || |||||||||||||  |||  |  |||| ||| |||||||||||  ||||||| |||| |||| ||  ||||||||||    
T  8073671 ttaaattaaatgaaatatgatgagatttaatgattcaatagttgaaaataaacttgtgcatggtgtaatactattttgcttgtacacgttagacaaaa 8073768  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 29264562 - 29264710
Alignment:
Q  30 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaa 129  Q
    |||||||||||||||||| ||  ||| ||||| | |||||||||| | ||   ||||||||||| ||||| |  |||||||| ||||| |||| ||  ||    
T  29264562 gtcttgcaccatgcacaatgtggtttttaccactggatcaataaggctcaatattaaattaaattaaatatggtgagatttattgatccaatggtggcaa 29264661  T
Q  130 acaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaa 178  Q
    | ||| ||||||| |   |||||||| |||| ||||||| |||||||||    
T  29264662 ataaacttgtgcacgaagcaatactattttgcttgtgcacattagacaa 29264710  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 41625496 - 41625588
Alignment:
Q  30 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatg 122  Q
    ||||||||||||||||||| || |||| |||| ||||||||||| |  |||  ||||||||||| ||||| || |||||| | ||||| ||||    
T  41625496 gtcttgcaccatgcacaagattctttccaccattagatcaataaatttcactattaaattaaataaaatatgatgagattcattgatccaatg 41625588  T

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