View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4523_low_19 (Length: 314)

Name: NF4523_low_19
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4523_low_19
NF4523_low_19
[»] chr5 (6 HSPs)
chr5 (14-287)||(33807942-33808213)
chr5 (14-287)||(33811596-33811867)
chr5 (14-287)||(33816514-33816785)
chr5 (109-204)||(16698504-16698601)
chr5 (109-204)||(22763905-22764002)
chr5 (235-287)||(16698618-16698670)
[»] chr6 (4 HSPs)
chr6 (19-287)||(31151926-31152195)
chr6 (90-287)||(22981504-22981710)
chr6 (90-287)||(23806698-23806904)
chr6 (28-211)||(1111378-1111564)
[»] chr3 (10 HSPs)
chr3 (24-287)||(50603138-50603403)
chr3 (37-288)||(54967209-54967477)
chr3 (90-288)||(44782523-44782733)
chr3 (37-204)||(39298736-39298908)
chr3 (90-206)||(18556392-18556511)
chr3 (31-135)||(31725346-31725448)
chr3 (90-204)||(54979933-54980051)
chr3 (109-208)||(17645800-17645897)
chr3 (217-275)||(54979854-54979910)
chr3 (235-287)||(17645928-17645981)
[»] chr1 (2 HSPs)
chr1 (72-287)||(29706854-29707069)
chr1 (112-204)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (37-269)||(26516-26752)
[»] chr7 (11 HSPs)
chr7 (37-288)||(25857130-25857395)
chr7 (90-287)||(4842648-4842857)
chr7 (37-287)||(4835575-4835840)
chr7 (90-206)||(13465046-13465165)
chr7 (27-196)||(8252686-8252853)
chr7 (109-204)||(27341025-27341120)
chr7 (92-204)||(17845847-17845960)
chr7 (90-204)||(24379370-24379487)
chr7 (237-287)||(24380113-24380163)
chr7 (138-204)||(38994151-38994218)
chr7 (217-287)||(24379279-24379347)
[»] chr8 (3 HSPs)
chr8 (37-287)||(41481548-41481815)
chr8 (37-288)||(36167547-36167814)
chr8 (93-282)||(18951129-18951326)
[»] scaffold0479 (1 HSPs)
scaffold0479 (90-288)||(2727-2937)
[»] chr4 (3 HSPs)
chr4 (37-287)||(9757212-9757480)
chr4 (109-206)||(37286972-37287069)
chr4 (92-204)||(42682924-42683038)
[»] scaffold0003 (1 HSPs)
scaffold0003 (109-287)||(342217-342404)
[»] chr2 (2 HSPs)
chr2 (109-202)||(37037942-37038035)
chr2 (235-269)||(37038074-37038108)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 33807942 - 33808213
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807942 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33808041  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgc 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33808042 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg- 33808140  T
Q  214 atcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33808141 -tcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 33811596 - 33811867
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811596 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33811695  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgc 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33811696 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg- 33811794  T
Q  214 atcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33811795 -tcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 33816514 - 33816785
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816514 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33816613  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgc 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33816614 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg- 33816712  T
Q  214 atcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33816713 -tcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 16698618 - 16698670
Alignment:
Q  235 agtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    |||||||||| ||||||||||||||| |||||||| |||   |||||||||||    
T  16698618 agtgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca 16698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 31152195 - 31151926
Alignment:
Q  19 agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  31152195 agagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattccc 31152096  T
Q  119 attattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatca 217  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||  |||||||||||||||  |||    
T  31152095 attattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtca 31151996  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  31151995 ttttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  187 gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat 278  Q
    |||||||||||||||||| | | |||      || |  |||| |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| |||    
T  22981604 gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat 22981701  T
Q  279 ttcccaaca 287  Q
    |||||||||    
T  22981702 ttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 287
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  187 gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat 278  Q
    |||||||||||||||||| | | |||      || |  |||| |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| |||    
T  23806804 gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat 23806707  T
Q  279 ttcccaaca 287  Q
    |||||||||    
T  23806706 ttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  28 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 125  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  126 ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 211  Q
    ||||  | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 50603138 - 50603403
Alignment:
Q  24 gtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccatt 121  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||    
T  50603138 gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt 50603237  T
Q  122 attattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcatttt 221  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  50603238 attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt 50603337  T
Q  222 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||   | ||||||||||||||    
T  50603338 acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaaca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  131 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-ca--------tca 217  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| |  ||||| ||        | |    
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgctttta 54967278  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 288  Q
    ||| |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54967277 tttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat 54967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 44782733 - 44782523
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  186 ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 275  Q
    ||||||||||||||||||| |  ||||| |||         |||| |||||||||||  |||| |||||||||||||||||||||||||||||| |||||    
T  44782633 ggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcagg 44782536  T
Q  276 catttcccaacat 288  Q
    |||||||||||||    
T  44782535 catttcccaacat 44782523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  131 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 204  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 186  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  187 gttttccacgctaaaatttt 206  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  31 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 130  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  131 gtgga 135  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  186 ggttttccacgctaaaatt 204  Q
    ||||||||| |||||||||    
T  54979951 ggttttccatgctaaaatt 54979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 208  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 54979910 - 54979854
Alignment:
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 275  Q
    |||| ||||||||||||  |||| ||||||||||| ||||||||||||||||| |||||    
T  54979910 atttcacgtttccgcta--gtgcttattttgagttgacggaggagggaaattatgcagg 54979854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
Q  235 agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaaca 287  Q
    |||| |||||||||||||||||| ||||||||||| | ||| ||||||||||||    
T  17645928 agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca 17645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 72 - 287
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  72 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 171  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  172 actcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag 271  Q
    ||||| |||||||||||||||| | ||||||||||||||||  ||||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| |    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  272 caggcatttcccaaca 287  Q
     |||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  112 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  131 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccg 230  Q
    |||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||  | ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtg--ttattttacgttttcg 26555  T
Q  231 ctaaagtgcctattttgagttcacggaggagggaaatta 269  Q
    |||||||| |||||||||||||||| |||||||| ||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgt-tgt------gcat-cattt 220  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||||||||||||| | | |||      || |  ||||    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgcttatattt 25857196  T
Q  221 tacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 288  Q
     |||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  25857195 cacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat 25857130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 90 - 287
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  186 ggttttccacgctaaaattttgtt-gtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 275  Q
    ||||||||||||||||||| | || ||| ||| |        ||| ||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  4842757 ggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcagg 4842660  T
Q  276 catttcccaaca 287  Q
    ||||||||||||    
T  4842659 catttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgtgcat--------cat 218  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | | ||| |||         ||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgt-cattacgtttatat 4835642  T
Q  219 tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    || |||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4835641 ttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  187 gttttccacgctaaaatttt 206  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  27 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 122  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  123 ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 196  Q
    |||||| | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 17845847 - 17845960
Alignment:
Q  92 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 190  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  191 tccacgctaaaatt 204  Q
    ||||| ||||||||    
T  17845947 tccactctaaaatt 17845960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  187 gttttccacgctaaaatt 204  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  237 tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  138 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 24379347 - 24379279
Alignment:
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    ||||||||||||| |||  ||||||||||| |||||||||||||| ||||||| | || ||||| ||||||    
T  24379347 attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca 24379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------ca 217  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| |  ||||| |||         |    
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata 41481747  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    ||| |||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41481748 tttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 36167547 - 36167814
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgtt-gtg-catca-------- 217  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||| ||| |            
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata 36167745  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 288  Q
    ||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36167746 tttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat 36167814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  93 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 188  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  189 tttccacgctaaaattttg-----ttgtgcat-cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc 282  Q
    |||||| ||||||||| ||     ||  || |  |||| | |||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

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Target: scaffold0479 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 288
Target Start/End: Original strand, 2727 - 2937
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  186 ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 275  Q
    ||||||||||||||||||| |  ||||| |||         |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| ||| |    
T  2827 ggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatg 2924  T
Q  276 catttcccaacat 288  Q
    |||||||||||||    
T  2925 catttcccaacat 2937  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  131 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------c 216  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |  ||||| |||             
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat 9757281  T
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    |||| |||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  9757280 atttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca 9757212  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 206  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  92 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 189  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  190 ttccacgctaaaatt 204  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

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Target: scaffold0003 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 205  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  206 tgttgtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 287  Q
    | ||||| ||| |        ||| ||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 202  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  235 agtgcctattttgagttcacggaggagggaaatta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

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