View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_20 (Length: 306)
Name: NF4523_low_20
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 7784859 - 7784586
Alignment:
| Q |
19 |
tacacttgattagataatgtagctttacattcctactaatttgtaagggtttaaaactgttgggtcataatgggagctcaagagtctcacttatgttaga |
118 |
Q |
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| T |
7784859 |
tacacttgattagttaatgtagctttacatttctactaatttgtaggggttcaaaactgttgggtcatgatgggagttcaagagtctcatctatgttaga |
7784760 |
T |
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| Q |
119 |
taagagcaatcaaacatgtgagaaaaacacaatatttttatccaaaattttaaggcaaatgtatttataggttatctcagttataaaatattcaacctca |
218 |
Q |
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| T |
7784759 |
taagaacaatcacacatgtgagaaaaacacaatatttttattcaaaattttaaggc-aatgtatttataagttatctcagttataaaatgttcaacctcc |
7784661 |
T |
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| Q |
219 |
atttatctaaccgatgtgacacttctaactcatatttacacaacattcttcacttcaagtgtgagtctatcaatt |
293 |
Q |
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| T |
7784660 |
atttatctaactgatgtgacacttctaactcatacttacacaacattcttcacttcaagtgtgagtatatcaatt |
7784586 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 22337521 - 22337458
Alignment:
| Q |
154 |
ttttatccaaaattttaaggcaaatgtatttataggttatctcagttataaaatattcaacctc |
217 |
Q |
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| T |
22337521 |
ttttatccaaaactttaaagacaatgaatttataggtcatctcagttataaagtgttcaacctc |
22337458 |
T |
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