View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_23 (Length: 289)
Name: NF4523_low_23
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 5647327 - 5647054
Alignment:
| Q |
5 |
cactctatagcttatatgtcctacatacatttgtttgtttcccatatatttatatgaagatactataaataaaataaagaaataaaagtttgtaagtgtt |
104 |
Q |
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| T |
5647327 |
cactctatagcttatatgtcctacatacatttgtttgtttcacacatatttatatgaagatactataaataaaataaagaaataaaagtttgtaagggtt |
5647228 |
T |
|
| Q |
105 |
atctcaactaacaaatacaaatattgatatattagacacatttacccgagttcaaatctaaaacgttacaattatgtatgtgaatttgactgtttgagat |
204 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5647227 |
atctcaactaacaaatacaaatattgatagattagacacatttatccgagttcaaatctgaaacgttacaattatgtatgtgaatttgactgtttgagat |
5647128 |
T |
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| Q |
205 |
gttgattaccatttcgtataacgaataataaaaaagtaggtaattttaccaaattgaaatactataaagtgatg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5647127 |
gttgattaccatttcgtataacgaataataaaaaagtaagtaattttaccaaattgaaatactataaagtgatg |
5647054 |
T |
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