View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_29 (Length: 251)
Name: NF4523_low_29
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 32158042 - 32158184
Alignment:
| Q |
99 |
tattttttattgagttgagctacgtcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
198 |
Q |
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| T |
32158042 |
tattttttattgagttgagctaaatcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
32158141 |
T |
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| Q |
199 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
241 |
Q |
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| T |
32158142 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
32158184 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32157944 - 32157999
Alignment:
| Q |
1 |
tgatggtcgtattgtattgtcattcttttgaagtgtatgtttgatttgggggtgtt |
56 |
Q |
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| T |
32157944 |
tgatggtcgtattgtattgtcattcttttgaagtgtatgtttgatttgggggtgtt |
32157999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 23489565 - 23489480
Alignment:
| Q |
154 |
aacattgtgcaactagacaatcaatcatgacgtccacatgataaaacaacttgactacaactgcatcgaagtcctactatactctg |
239 |
Q |
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| T |
23489565 |
aacattatgcaagtagacaatcaatcacgacgtcctcaagataaaacaactcaactacaactgtattgaagtcctactgtactctg |
23489480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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