View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_30 (Length: 251)
Name: NF4523_low_30
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7161028 - 7161263
Alignment:
| Q |
1 |
tacaacatctcccaccgtttgaacgtcttccattcttgaagtt-attcatttaaatttgcttgatgaattggagtatatgtattatgaaaagctcctttc |
99 |
Q |
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| T |
7161028 |
tacaatatctcccaccgttggaacgtcttccattcttgaagtttattcatttaaattcgctccttaa----gagtatatatattacgaaaagctcctttt |
7161123 |
T |
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| Q |
100 |
gcctgaaatattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatgacaatgat |
199 |
Q |
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| T |
7161124 |
gcctgagatattctttccatctttagagaggctccttttgtgcaagtgcaaaaagttgaggggatggtggaggttgggagctgatgtcaatgacaatgat |
7161223 |
T |
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| Q |
200 |
actgatgactcgtcaaaatcacataatctctccgtccctt |
239 |
Q |
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| T |
7161224 |
actgataactcgtcaaaatcacataatctctctgtccctt |
7161263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 3917605 - 3917510
Alignment:
| Q |
97 |
ttcgcctgaaatattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatga |
192 |
Q |
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| T |
3917605 |
ttcgcctgaaacattcttcccatgtttaaagagtctctttatatggaaatgcaataagttgaggggatggtggaagatgagtgatgatgtcaatga |
3917510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 3280888 - 3280852
Alignment:
| Q |
154 |
gttgaggggatggtggaggatgggagatgatgtcaat |
190 |
Q |
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| T |
3280888 |
gttgaagggatggtggaggatgggagatgatttcaat |
3280852 |
T |
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