View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_32 (Length: 243)
Name: NF4523_low_32
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33811491 - 33811268
Alignment:
| Q |
1 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33811491 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33811392 |
T |
|
| Q |
101 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33811391 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33811292 |
T |
|
| Q |
201 |
attctccccctccagccaaaggga |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
33811291 |
attctccccctccagccaaaggga |
33811268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33816409 - 33816186
Alignment:
| Q |
1 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33816409 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33816310 |
T |
|
| Q |
101 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33816309 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33816210 |
T |
|
| Q |
201 |
attctccccctccagccaaaggga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
33816209 |
attctccccctccagccaaaggga |
33816186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 33807837 - 33807638
Alignment:
| Q |
1 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
33807837 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaat |
33807738 |
T |
|
| Q |
101 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33807737 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
194 |
accaacaattctccccctccagccaaaggga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
195 |
ccaacaattctccccctccagccaaaggga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
195 |
ccaacaattctccccctccagccaaaggga |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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