View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_low_36 (Length: 235)
Name: NF4523_low_36
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 2081994 - 2081781
Alignment:
| Q |
15 |
gagaaaaatgttagtcagtttggagaattgagaaataaataaaataactttacaagtttaaggtggcatgttgtcttattacaacataaaagtagataag |
114 |
Q |
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| T |
2081994 |
gagaaaaatgttagtcagtttggagaattgagaaataaataaaataactttacaagtttaaggtggcatgttgtcttattacaacataaaagtagataag |
2081895 |
T |
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| Q |
115 |
agcacaagggcgtaaggcgtaatacattgacattataatatcatgggttgagtacttgagtttattcatactttctcaatggagcatgatttgatcatgc |
214 |
Q |
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| T |
2081894 |
agctcaagggcgtaaggcgtaatacattgacattataatatcatgggttgagtacttgagtttattcatactttctcaatggagcatgatttgatcatgc |
2081795 |
T |
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| Q |
215 |
atagttgatgatgt |
228 |
Q |
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|||||||||||||| |
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| T |
2081794 |
atagttgatgatgt |
2081781 |
T |
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