View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4523_low_8 (Length: 437)

Name: NF4523_low_8
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4523_low_8
NF4523_low_8
[»] chr8 (14 HSPs)
chr8 (1-418)||(4875572-4875988)
chr8 (358-418)||(4736207-4736267)
chr8 (357-418)||(4714300-4714361)
chr8 (357-418)||(4702964-4703025)
chr8 (357-418)||(4890934-4890995)
chr8 (357-418)||(4688468-4688529)
chr8 (357-398)||(4725752-4725793)
chr8 (357-418)||(10446218-10446279)
chr8 (351-398)||(4914085-4914132)
chr8 (357-398)||(4745223-4745264)
chr8 (357-418)||(4904976-4905037)
chr8 (357-398)||(4777136-4777177)
chr8 (357-418)||(4995761-4995822)
chr8 (357-418)||(21440145-21440206)


Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 4875572 - 4875988
Alignment:
Q  1 tttgtacctgttgtttatacatgaccaaaaaa-ttgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagt 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875572 tttgtacctgttgtttatacatgaccaaaaaaattgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagt 4875671  T
Q  100 tttattcgtacatattagcccttatacaaattactagatgaatctagnnnnnnnnctttctaaacaaacctgtaattaatactactgaccttgtcttaaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| |||||||    
T  4875672 tttattcgtacatattagcccttatacaaattactagatgaatctagttttttt--tttctaaacaaacctgtaattaatactactgaccttctcttaaa 4875769  T
Q  200 atatatatgaatattaatgtgctgctacgtacatactagctagctgactccatgcaatgtattcttcttacctgtaacctttgcctgtggtggaacctat 299  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4875770 atatatatgaatattaatgtcctgctacgtacatactagctagctgactccatgcaatgtattcttcttacctgcaacctttgcctgtggtggaacctat 4875869  T
Q  300 atcgaatctctccacgagtgataatggtgaagctgagtacgtggtatgatcattagaattgttcaaagtcctcaattctataactgaaatgaatggagtt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875870 atcgaatctctccacgagtgataatggtgaagctgagtacgtgggatgatcattagaattgttcaaagtcctcaattctataactgaaatgaatggagtt 4875969  T
Q  400 ccatttccagtgttaacaa 418  Q
    |||||||||||||||||||    
T  4875970 ccatttccagtgttaacaa 4875988  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 4736267 - 4736207
Alignment:
Q  358 ttgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4736267 ttgttcaaagtcctcaattctataactgaaatgaatggagttccgtttcctgtgttaacaa 4736207  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 4714361 - 4714300
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  4714361 attgttcaaagtcctcaattctataactgaaatgaatggagtcccttttcctgtgttaacaa 4714300  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 4703025 - 4702964
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    ||||||||||||||||||||| |||||||||||||||||||| || || || ||||||||||    
T  4703025 attgttcaaagtcctcaattcaataactgaaatgaatggagtccctttgcctgtgttaacaa 4702964  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 4890934 - 4890995
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    ||||||||||| ||||||||||||| |||||||||||||||| || ||||| ||||||||||    
T  4890934 attgttcaaaggcctcaattctatagctgaaatgaatggagtcccttttcctgtgttaacaa 4890995  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 4688529 - 4688468
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    |||||||||||||||||||||||||  ||||||||||||||| || || || ||||||||||    
T  4688529 attgttcaaagtcctcaattctatagatgaaatgaatggagtcccgttgcctgtgttaacaa 4688468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 4725793 - 4725752
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagt 398  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4725793 attgttcaaagtcctcaattctatagctgaaatgaatggagt 4725752  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 10446279 - 10446218
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    ||||||||||||||||||||||||| |||||||||||||| | || || || ||||||||||    
T  10446279 attgttcaaagtcctcaattctatagctgaaatgaatggaatccctttgcctgtgttaacaa 10446218  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 4914085 - 4914132
Alignment:
Q  351 attagaattgttcaaagtcctcaattctataactgaaatgaatggagt 398  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||    
T  4914085 attagaatttgtcaaagtcctcaattctaaaactgaaatgaatggagt 4914132  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 4745264 - 4745223
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagt 398  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  4745264 attgttcaaactcctcaattctatagctgaaatgaatggagt 4745223  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 4904976 - 4905037
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    ||||||||||| ||||||||||||  |||||||||||||||| || || || ||||||||||    
T  4904976 attgttcaaaggcctcaattctatggctgaaatgaatggagtccctttgcctgtgttaacaa 4905037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 4777136 - 4777177
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagt 398  Q
    ||||||||||| ||||||||||||| | ||||||||||||||    
T  4777136 attgttcaaaggcctcaattctatagccgaaatgaatggagt 4777177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 4995822 - 4995761
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    ||||||||||| ||||||||| ||| | |||||||||||||| || || || ||||||||||    
T  4995822 attgttcaaaggcctcaattcaatagcagaaatgaatggagtccctttgcctgtgttaacaa 4995761  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 21440145 - 21440206
Alignment:
Q  357 attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaa 418  Q
    |||||||| || ||||||||||||  |||||||||||||||| || || || ||||||||||    
T  21440145 attgttcatagccctcaattctatggctgaaatgaatggagtccctttgcctgtgttaacaa 21440206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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