View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523_low_9 (Length: 434)
Name: NF4523_low_9
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 5695540 - 5695961
Alignment:
| Q |
1 |
tcatcacttagaattgaggactgcctagtatttgcatacatcatattggctgttctcttgtctattgtggcctatgactatcaggtgcagttgttattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5695540 |
tcatcacttagaattgaggactgcctagtatttgcatacatcatattggctgttctcttgtctattgtggcctatgactatcaggtgcagttgttattgt |
5695639 |
T |
|
| Q |
101 |
ctttaaaaagtctcaaatatacttttggtcagattttcaatcttgaagtctacatttgactcatcaatttttcatgtgcaggaaattggagttcttgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5695640 |
ctttaaaaagtctcaaatatacttttggtcagattttcaatcttgaagtctacatttgactcatcaatttttcatgtgcaggaaattggagttcttgtga |
5695739 |
T |
|
| Q |
201 |
cactttttagcttgtttcatgcttgtgttggcttcgttttaccatcacttgctagattgaggaccatgtaatctcattacaaagagttgtacttctttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5695740 |
cactttttagcttgtttcatgcttgtgttggcttcgttttaccatcacttgctagattgaggaccatgtaatctcattacaaagagttgtacttctttgt |
5695839 |
T |
|
| Q |
301 |
ttgctcaataatggatttatatttttaatttccttgtttgcaggtatgtacctaatgaattgcgtggagggatgatggggctctctcttgcccctgcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5695840 |
ttgctcaataatggatttatatttttaatttccttgtttgcaggtatgtacctaatgaattgcgtggagggatgatggggctctctcttgcccctgcaaa |
5695939 |
T |
|
| Q |
401 |
tgctgcaattctgctatctgtg |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5695940 |
tgctgcaattctgctatctgtg |
5695961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University