View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4524-Insertion-2 (Length: 780)

Name: NF4524-Insertion-2
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4524-Insertion-2
NF4524-Insertion-2
[»] chr6 (16 HSPs)
chr6 (234-526)||(23246879-23247170)
chr6 (572-780)||(23247216-23247424)
chr6 (572-746)||(23257601-23257778)
chr6 (334-526)||(23251391-23251581)
chr6 (356-526)||(23257389-23257555)
chr6 (572-742)||(23251628-23251798)
chr6 (572-742)||(23266162-23266329)
chr6 (573-726)||(23289582-23289729)
chr6 (573-726)||(23283239-23283389)
chr6 (584-684)||(23391074-23391174)
chr6 (472-526)||(23266062-23266116)
chr6 (626-709)||(23593009-23593092)
chr6 (582-684)||(23582849-23582948)
chr6 (582-684)||(23586732-23586831)
chr6 (334-442)||(23265963-23266060)
chr6 (630-665)||(23633835-23633870)
[»] chr7 (1 HSPs)
chr7 (12-53)||(17962899-17962940)
[»] chr5 (2 HSPs)
chr5 (12-53)||(815588-815629)
chr5 (12-53)||(28688437-28688478)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 234 - 526
Target Start/End: Original strand, 23246879 - 23247170
Alignment:
Q  234 attttacctcctacaacttactgtaaccaaaacaaggatagcagtagataaatgttctatgtgaaaagctgaaattccaactgaataggttatatttgga 333  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23246879 attttacctcctacaacttagtataaccaaaacaaggatagcagtagataaatgttctatgtgaaaagctgaaattccaactgaataggttatatttgga 23246978  T
Q  334 aaattccaaaattatattattttttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaataattcacataaaaagctataaaa 433  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23246979 aaattccaaaattatattcttttttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaat-attcacataaaaagctataaaa 23247077  T
Q  434 agaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23247078 agaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctatcctacaatcc 23247170  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 572 - 780
Target Start/End: Original strand, 23247216 - 23247424
Alignment:
Q  572 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaac 671  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  23247216 tgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcctccacaac 23247315  T
Q  672 tctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgacgacatcttcgacaatttcaatattgttag 771  Q
    |||||||||||||||||||||| || ||| || ||||||||||||||| ||||||| ||||||||||||||||||||| ||| | | |||||||||||||    
T  23247316 tctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttag 23247415  T
Q  772 tcattaaag 780  Q
    |||||||||    
T  23247416 tcattaaag 23247424  T

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Target: chr6; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 572 - 746
Target Start/End: Original strand, 23257601 - 23257778
Alignment:
Q  572 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 668  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23257601 tgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcaac 23257700  T
Q  669 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgacgaca 746  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||||| ||||||    
T  23257701 aattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgaca 23257778  T

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Target: chr6; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 334 - 526
Target Start/End: Original strand, 23251391 - 23251581
Alignment:
Q  334 aaattccaaaattatattattttttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaataattcacataaaaagctataaaa 433  Q
    |||||||||||||||||| || |||||||||||||||||   |||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||    
T  23251391 aaattccaaaattatatt-ttctttcatatataataaaaaggatgagatgcactttacgcttgattagtgatttaataattcacataaaa-gctataaaa 23251488  T
Q  434 agaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 526  Q
    | ||||||||||| || || |||||||||||||||||  |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  23251489 ataaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatcc 23251581  T

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Target: chr6; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 356 - 526
Target Start/End: Original strand, 23257389 - 23257555
Alignment:
Q  356 tttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaataattcacataaaaagctataaaaagaaattcctttttaattttaa 455  Q
    |||||||||||||||||||||   |||||||| || ||| |||||||||||||||||| ||||||||| |||||||| ||||| ||||||| ||||| ||    
T  23257389 tttcatatataataaaagtca---gatgcactttaagcttgattagtgatttaataatccacataaaa-gctataaagagaaactccttttcaatttcaa 23257484  T
Q  456 cctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 526  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23257485 cctatgtatatgcagaatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 23257555  T

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Target: chr6; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 572 - 742
Target Start/End: Original strand, 23251628 - 23251798
Alignment:
Q  572 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 668  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23251628 tgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatattcctccac 23251727  T
Q  669 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgac 742  Q
    ||||||||||||||||||| |||   ||||||||| ||||| |||| |||| ||||||| |||| ||| |||||    
T  23251728 aactctggcatattcaacacttc---ctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgac 23251798  T

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Target: chr6; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 572 - 742
Target Start/End: Original strand, 23266162 - 23266329
Alignment:
Q  572 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 668  Q
    ||||||||||||||||||||| ||||| | ||||| ||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||     
T  23266162 tgatacctcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctccaa 23266261  T
Q  669 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgac 742  Q
    ||||| ||||||||||||||||||      |||||| |||||||||||||| ||||||  ||||||||||||||    
T  23266262 aactccggcatattcaacatttcc------tcttcttcttccacacaaaacatattcaactcctttgtggcgac 23266329  T

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Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 573 - 726
Target Start/End: Original strand, 23289582 - 23289729
Alignment:
Q  573 gatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaact 672  Q
    |||||||| |||||||||||   |||||||| || |||||||||||||||   |||||| |||||||||||||||||||||||||||||  |||||||||    
T  23289582 gatacctcttcatcttgaaa---ttgtacatcaaaatcttcatactcatg---ctcaaaactatgtgtaggggacattagtgccatatttttccacaact 23289675  T
Q  673 ctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattca 726  Q
    || |||||||||||| |||||  |||| ||| ||||||||||||||| ||||||    
T  23289676 cttgcatattcaacacttcctcttctttttcgacttccacacaaaacatattca 23289729  T

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Target: chr6; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 573 - 726
Target Start/End: Original strand, 23283239 - 23283389
Alignment:
Q  573 gatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaact 672  Q
    |||||||| ||||||||||| ||||||| || || || ||||||||||||   ||| |  |||||||||||||||||||  |||||||||||||||| ||    
T  23283239 gatacctcttcatcttgaaagtcttgtaaatcaaaattttcatactcatg---ctccatactatgtgtaggggacattaacgccatattcctccacatct 23283335  T
Q  673 ctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattca 726  Q
    ||| ||||||||||| |||||  |||| ||| ||||||||||||||| ||||||    
T  23283336 ctgacatattcaacacttcctcttctttttcgacttccacacaaaacatattca 23283389  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 584 - 684
Target Start/End: Original strand, 23391074 - 23391174
Alignment:
Q  584 atcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattc 683  Q
    ||||||||| ||||| |||||||||| |||||| |||| |||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||    
T  23391074 atcttgaaagtcttgaacatgaatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttc 23391173  T
Q  684 a 684  Q
    |    
T  23391174 a 23391174  T

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Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 23266062 - 23266116
Alignment:
Q  472 atttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266062 atttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 23266116  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 626 - 709
Target Start/End: Original strand, 23593009 - 23593092
Alignment:
Q  626 ctcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctacttc 709  Q
    ||||| ||||||||||||||||||||| |||||||||||| || ||||||| || ||||||| ||||| ||||| |||| ||||    
T  23593009 ctcaacgctatgtgtaggggacattagagccatattcctcaacgactctggaatgttcaacacttcctcctctttttcttcttc 23593092  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 684
Target Start/End: Original strand, 23582849 - 23582948
Alignment:
Q  582 tcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatat 681  Q
    ||||||||||| ||||   ||| ||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |    
T  23582849 tcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgt 23582945  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 684
Target Start/End: Original strand, 23586732 - 23586831
Alignment:
Q  582 tcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatat 681  Q
    ||||||||||| ||||   ||| ||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |    
T  23586732 tcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgt 23586828  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 23265963 - 23266060
Alignment:
Q  334 aaattccaaaattatattattttttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaataattcacataaaaagctataaaa 433  Q
    |||||||||| ||||||| || ||||||||||||||||||          |||| |||| | |||||||||||||| ||||||||| ||||||||| |||    
T  23265963 aaattccaaagttatattcttctttcatatataataaaag----------cactttatgattgattagtgatttaaaaattcacat-aaaagctatgaaa 23266051  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 665
Target Start/End: Original strand, 23633835 - 23633870
Alignment:
Q  630 aagctatgtgtaggggacattagtgccatattcctc 665  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23633835 aagctatgtgtaggggacattagagccatattcctc 23633870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 17962899 - 17962940
Alignment:
Q  12 ccagataacttcaataactctaggggcatttggaggcttgat 53  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  17962899 ccagataacttcaataactctaggggcattaggaggcttgat 17962940  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 815588 - 815629
Alignment:
Q  12 ccagataacttcaataactctaggggcatttggaggcttgat 53  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  815588 ccagataacttcaataactctaggggcattaggaggcttgat 815629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 28688437 - 28688478
Alignment:
Q  12 ccagataacttcaataactctaggggcatttggaggcttgat 53  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  28688437 ccagataacttcaataactctaggggcattaggaggcttgat 28688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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