View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524-Insertion-5 (Length: 661)
Name: NF4524-Insertion-5
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Original strand, 49583958 - 49584607
Alignment:
| Q |
8 |
aacgtgggcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaggtttttcatttt |
107 |
Q |
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| T |
49583958 |
aacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcatttt |
49584057 |
T |
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| Q |
108 |
aatatcgattgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttcaattgattggtaggtg |
207 |
Q |
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| T |
49584058 |
aatatcgattgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatacttatt----gctatgttcaattgattggtaggtg |
49584153 |
T |
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| Q |
208 |
tcagagacacttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcg |
307 |
Q |
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| T |
49584154 |
tcagagacacttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcg |
49584253 |
T |
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| Q |
308 |
gtaaaggnnnnnnngatcttatatgcccccatgttgatgatgtaaaatccaatgaagttgttctggtcggtccttcaaaaataccgaagggaaaagcttg |
407 |
Q |
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| T |
49584254 |
gtaaaggaaaaaaagatcttatatgcccccatgttgatgatgtaaaatccaatgaagctgttctggtcggtccttcaaaaataccgaagggaaaagcttg |
49584353 |
T |
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| Q |
408 |
tgcaatgcttgaaccctcagaaataataagctttctgacaggaaatttcagattaagtaaatctcgaactgatgatctctttcgggaagccgtttggcct |
507 |
Q |
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| T |
49584354 |
tgcaatgcttgaaccctcagaaataataagctttctgacaggaaacttcagattaagtaaatctcgaactgatgatctcttttgggaagccgtttggcct |
49584453 |
T |
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| Q |
508 |
cgtctacttgcaagaggttggcactcggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtccctcgagttaaacagt |
607 |
Q |
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| T |
49584454 |
cgtctacttgcaagaggttggcactcggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtcccccgagttaaacagt |
49584553 |
T |
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| Q |
608 |
tttcgaggaatctgctgaagggggtacaatatttcgattctccgtttgaaatcc |
661 |
Q |
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| T |
49584554 |
tttcaaggaatctgctgaagggggtacaatatttcgattctccgtttgaaatcc |
49584607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 542
Target Start/End: Complemental strand, 15769610 - 15769547
Alignment:
| Q |
479 |
atgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
542 |
Q |
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| T |
15769610 |
atgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaacc |
15769547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 542
Target Start/End: Complemental strand, 46643193 - 46643132
Alignment:
| Q |
481 |
gatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
542 |
Q |
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| T |
46643193 |
gatctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
46643132 |
T |
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