View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524-Insertion-6 (Length: 544)
Name: NF4524-Insertion-6
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 22441660 - 22441235
Alignment:
| Q |
8 |
caatggggaggaaggactcactttgtccttgccattgttaatggaattcatgaggttctatttcattctatggatattaccattagtttagattattgaa |
107 |
Q |
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| T |
22441660 |
caatggggaggaaggactcactttgtccttgccattgttaatggaattcatgaggttctattttattctatggatattgccattagtttagattattgaa |
22441561 |
T |
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| Q |
108 |
ctgattgacgttaatcttgatgca---------cataggaaatgattatagattaatgtcaaaatttatatatatgat--------ctatat-gattgta |
189 |
Q |
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| T |
22441560 |
ttgattgacgttaatcttgacacatctcgatgacataggaaataattatagattaatgtcaaaatttatagatatgattattcatacgataacgatagta |
22441461 |
T |
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| Q |
190 |
atttcgaatcagaagtatttatacgataggattatgttgttgaatgagtttaactgttaatgtaactcttctggtgtaatttgatcacacctctaactcg |
289 |
Q |
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| T |
22441460 |
attttgaatccaaaatacttatctggtaggata---ttactgaatgagtgtaattgttagtgtaactcctccgatgtaattcgatcccatctctaactca |
22441364 |
T |
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| Q |
290 |
tgtttttggttgtgtgatttctctaggtccaggaattacctcccgtttttatcacttttcttgcgtggagcataggcgaggtaatttatttactttttat |
389 |
Q |
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| T |
22441363 |
ggtctttggctgtgtgctttctccaggtccaggagttacctcccgtttttatcacttttcttgcgtggagcataggcgaggtaatttatttactttttat |
22441264 |
T |
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| Q |
390 |
tcgattgaattagatgtagttcatttatg |
418 |
Q |
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| T |
22441263 |
tcgattgaattagatgtagttcatttatg |
22441235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 22441237 - 22441147
Alignment:
| Q |
454 |
atggttgagcatagcattgcataattgaaaacacggctttgtactctatatctctaaccactggataattgaaaaactacatcagacacta |
544 |
Q |
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| T |
22441237 |
atggttgagcatagcattgcataattgaaaacacggctttgtactctatatctctaaccactggataattgaaaaactacatcagacacta |
22441147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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