View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524_high_6 (Length: 268)
Name: NF4524_high_6
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 26414331 - 26414532
Alignment:
| Q |
19 |
caaaggcagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctggtgta |
118 |
Q |
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| T |
26414331 |
caaaggtagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctggtgta |
26414430 |
T |
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| Q |
119 |
gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcaccagttctaacacagggctagaatgtataac |
218 |
Q |
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| T |
26414431 |
gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaaagcagtgagtcaccagttctaacacagggctagaatgtataac |
26414530 |
T |
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| Q |
219 |
gt |
220 |
Q |
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|| |
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| T |
26414531 |
gt |
26414532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 27986572 - 27986487
Alignment:
| Q |
135 |
cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcaccagttctaacacagggctagaatgtataacgt |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
27986572 |
cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgt |
27986487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 28073104 - 28073019
Alignment:
| Q |
135 |
cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcaccagttctaacacagggctagaatgtataacgt |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
28073104 |
cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgt |
28073019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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