View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524_low_1 (Length: 683)
Name: NF4524_low_1
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 40472565 - 40472999
Alignment:
| Q |
1 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaattcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40472565 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
40472664 |
T |
|
| Q |
101 |
tttccttgtgacgttgatttattttgtgagatacttgtagatatagagaggtgaggatgatatacattgattttgtgggttgcaaattttccttttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40472665 |
tttccttgtgacgttgatttattttgtgagatacttgtagatatagagaggtgaggatgatatacattgattttgtgggttgcaaattttccttttcaca |
40472764 |
T |
|
| Q |
201 |
ttcttcattgtcttatcgttgatctagcccgagttgtgttgcaaattacgagcttttagaataagatagagtggtgtgtgacatttaaaatgaaacaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40472765 |
ttcttcattgtcttatcgttgatctagcccgagttgtgttgcaaattacgagcttttagaataagatagagtggtgtatgacatttaaaatgaaacaaat |
40472864 |
T |
|
| Q |
301 |
tttcttctctaagggaagttgcttgttaattaacacttcagcttgttaattaccactaatatacttcatccaatcatttttagttgtcgttttgggcctt |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40472865 |
tttcttctccaagggaagttgcttgttaattaacacttcagcttgttaattaccactaatatacttcatccaatcatttttagttgtcgttttgggcctt |
40472964 |
T |
|
| Q |
401 |
gtacaatgaccaaaataatcaatattcttagaatg |
435 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40472965 |
gtacaatgaccaaaataatcaatattcttagaatg |
40472999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40466229 - 40466375
Alignment:
| Q |
1 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaattcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
40466229 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40466328 |
T |
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| Q |
101 |
tttccttgtgacgttgatttattttgtgagatacttgtagatataga |
147 |
Q |
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|||||||||| ||||| || || |||||| ||||||||| ||||| |
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| T |
40466329 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagataga |
40466375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40489211 - 40489357
Alignment:
| Q |
1 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaattcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
40489211 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40489310 |
T |
|
| Q |
101 |
tttccttgtgacgttgatttattttgtgagatacttgtagatataga |
147 |
Q |
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|||||||||| ||||| || || |||||| ||||||||| ||||| |
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|
| T |
40489311 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagataga |
40489357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 498 - 565
Target Start/End: Original strand, 40473059 - 40473126
Alignment:
| Q |
498 |
ctgtaataaatacctaattaagaataattttggcaaagtattagtaactaatgttgcattatagtttg |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40473059 |
ctgtaataaatacctaattaagaataattttggcaaagtattagtaactaatgttgcattatagtttg |
40473126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 40480380 - 40480464
Alignment:
| Q |
41 |
aaaattcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatggtttccttgtgacgttgatttatttt |
125 |
Q |
| |
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|||| |||||| ||||||||||| || ||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
40480380 |
aaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttgaattatttt |
40480464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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