View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524_low_11 (Length: 223)
Name: NF4524_low_11
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 38197539 - 38197664
Alignment:
| Q |
11 |
atcatcagcaaataataggtgtgcgaggagtgtagctccccgacacaccttcactccatgaatgtcccctctcgcttccgattttttcaaaagcgctgat |
110 |
Q |
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| T |
38197539 |
atcatcagcaaataataggtatgtgaggagtggagctccccgacacaccttccctccatgaatgtccactctcgcttccgattttttcaaaagcgctgat |
38197638 |
T |
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| Q |
111 |
cgtccatccgcacatatgataaataa |
136 |
Q |
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| T |
38197639 |
cgtccatccgcacatatgataaataa |
38197664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 38197845 - 38197919
Alignment:
| Q |
131 |
aaataaataaggcgacactggatcaccctgcctaagttctctttttggtaaatgctaacatttgtcctaagggta |
205 |
Q |
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||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38197845 |
aaataaataaggcaacagtgcatcaccctgcctaagttctctttttggtaaatgctaacatatgtcctaagggta |
38197919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 32757632 - 32757704
Alignment:
| Q |
12 |
tcatcagcaaataataggtgtgcgaggagtgtagctccccgacacaccttcactccatgaatgtcccctctcg |
84 |
Q |
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| T |
32757632 |
tcataagcaaataaaaggtgtgttagaagcggagctccccgacacaccttcacaccatgaatatcacctctcg |
32757704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 34210950 - 34210900
Alignment:
| Q |
11 |
atcatcagcaaataataggtgtgcgaggagtgtagctccccgacacacctt |
61 |
Q |
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| T |
34210950 |
atcatcagcaaataataggtgtgtgagaagcggagctcctcgacacacctt |
34210900 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 6510017 - 6510090
Alignment:
| Q |
15 |
tcagcaaataataggtgtgcgaggagtgtagctccccgacacaccttcactccatgaatgtcccctctcgcttc |
88 |
Q |
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||||||||||| ||||||| ||||| | ||||| ||||||| |||||| |||||||| ||| |||||||||| |
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| T |
6510017 |
tcagcaaataaaaggtgtgtgaggattagtgctcctcgacacaacttcacaccatgaatatccactctcgcttc |
6510090 |
T |
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