View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4524_low_2 (Length: 535)

Name: NF4524_low_2
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4524_low_2
NF4524_low_2
[»] chr8 (7 HSPs)
chr8 (1-524)||(20186056-20186595)
chr8 (1-524)||(20205123-20205662)
chr8 (307-384)||(9700080-9700157)
chr8 (322-385)||(10923674-10923737)
chr8 (325-384)||(29592129-29592188)
chr8 (304-364)||(7714341-7714401)
chr8 (305-341)||(38602449-38602485)
[»] chr7 (5 HSPs)
chr7 (1-524)||(44289635-44290174)
chr7 (319-367)||(529458-529506)
chr7 (307-341)||(35267471-35267505)
chr7 (324-385)||(8094384-8094445)
chr7 (307-348)||(12234803-12234844)
[»] chr1 (3 HSPs)
chr1 (307-367)||(29793612-29793672)
chr1 (309-364)||(46852143-46852198)
chr1 (314-369)||(52013981-52014036)
[»] chr5 (6 HSPs)
chr5 (314-375)||(9174904-9174965)
chr5 (314-364)||(11297117-11297167)
chr5 (314-364)||(36796628-36796678)
chr5 (310-367)||(31723901-31723958)
chr5 (320-364)||(11457197-11457241)
chr5 (310-362)||(14706201-14706253)
[»] chr3 (4 HSPs)
chr3 (306-367)||(51929837-51929898)
chr3 (308-381)||(22667485-22667558)
chr3 (308-381)||(22724124-22724197)
chr3 (314-382)||(13709757-13709825)
[»] chr6 (2 HSPs)
chr6 (305-341)||(12111089-12111125)
chr6 (325-385)||(10016701-10016761)
[»] chr4 (5 HSPs)
chr4 (307-365)||(47146042-47146100)
chr4 (320-385)||(33534096-33534161)
chr4 (324-381)||(46187840-46187897)
chr4 (309-341)||(23983899-23983931)
chr4 (309-341)||(23990594-23990626)
[»] chr2 (5 HSPs)
chr2 (307-361)||(28810366-28810420)
chr2 (308-349)||(9174929-9174970)
chr2 (308-349)||(15370238-15370279)
chr2 (308-341)||(28803445-28803478)
chr2 (314-385)||(36677730-36677802)


Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 20186056 - 20186595
Alignment:
Q  1 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20186056 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 20186155  T
Q  101 ccagtctaaatcaattcacacagtatc----------------tatctatcatcaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 184  Q
    |||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20186156 ccagtctaaatcaattcacacagtatctatctatctatctatctatctatcaccaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 20186255  T
Q  185 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcattttaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20186256 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcaatttaac 20186355  T
Q  285 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20186356 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 20186455  T
Q  385 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20186456 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 20186555  T
Q  485 atagaaataaacacttatatgattagtggctgtgctatac 524  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  20186556 atagaaataaacacttatatgattagtggttgtgctatac 20186595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 20205123 - 20205662
Alignment:
Q  1 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205123 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 20205222  T
Q  101 ccagtctaaatcaattcacacagtatc----------------tatctatcatcaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 184  Q
    |||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20205223 ccagtctaaatcaattcacacagtatctatctatctatctatctatctatcaccaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 20205322  T
Q  185 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcattttaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20205323 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcaatttaac 20205422  T
Q  285 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205423 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 20205522  T
Q  385 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205523 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 20205622  T
Q  485 atagaaataaacacttatatgattagtggctgtgctatac 524  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  20205623 atagaaataaacacttatatgattagtggttgtgctatac 20205662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 9700157 - 9700080
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 384  Q
    |||||| |||| ||| ||||||||||||||||||| | ||||| ||||| |||||||||||  |||||| || |||||    
T  9700157 gggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaa 9700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 10923737 - 10923674
Alignment:
Q  322 gacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 385  Q
    |||||||||||| |||| |||||||||| ||||| || |||| |||  ||||||||||||||||    
T  10923737 gacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 10923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 29592129 - 29592188
Alignment:
Q  325 ttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 384  Q
    |||||||||||||||||  |||||| ||||| ||||||||||||| | ||| ||||||||    
T  29592129 ttatttgagcttatctacaggcataaacactcgtgagactattcaggggagattatgaaa 29592188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 7714401 - 7714341
Alignment:
Q  304 catgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagact 364  Q
    ||||||| | |||| |||||||||||||||||||| || || |||| ||||| ||||||||    
T  7714401 catgggcatgtttggattgacttatttgagcttatataatgtcataaacacttgtgagact 7714341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 38602485 - 38602449
Alignment:
Q  305 atgggcctatttgcattgacttatttgagcttatcta 341  Q
    |||||||| |||| |||||||||||||||||||||||    
T  38602485 atgggcctgtttggattgacttatttgagcttatcta 38602449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 44289635 - 44290174
Alignment:
Q  1 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44289635 tcatccacatgagaatcttctaggcatgcaatttgcttgttatttctccaatcccacaagagtacctgggataattacacgacacagtataaattccata 44289734  T
Q  101 ccagtctaaatcaattcacacagtatc----------------tatctatcatcaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 184  Q
    |||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44289735 ccagtctaaatcaattcacacagtatctatctatctatctatctatctatcaccaaggtcctccaatagaaaagcaaacctgtgaatcacaacccgcagc 44289834  T
Q  185 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcattttaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44289835 aactaaatttccactaggtcctccaatagagaagctgaagatttcttgagacggaccagcattgataatagaaacctgcagttttgacattcaatttaac 44289934  T
Q  285 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44289935 actcaagcagcaaagagatcatgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaa 44290034  T
Q  385 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44290035 aaatatttgattcagcttatttccataagctcttgaggtctgaggatagcttgtgaaaagggcttgtatgaaacaatttagctttattttgtcatttatt 44290134  T
Q  485 atagaaataaacacttatatgattagtggctgtgctatac 524  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  44290135 atagaaataaacacttatatgattagtggttgtgctatac 44290174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 529506 - 529458
Alignment:
Q  319 attgacttatttgagcttatctagtggcatagacactggtgagactatt 367  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| |||||    
T  529506 attgacttatttgagcttatctactggcataaacacttgtgaggctatt 529458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 35267505 - 35267471
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatcta 341  Q
    ||||||||||| |||||||||||||||||||||||    
T  35267505 gggcctatttgaattgacttatttgagcttatcta 35267471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 8094445 - 8094384
Alignment:
Q  324 cttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 385  Q
    |||||||||||||||||| | |||||  |||| |||||||||||  ||||| ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaa 8094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 12234803 - 12234844
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatctagtggcat 348  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  12234803 gggcctatttggattgacttagttgagcttatctactggcat 12234844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 29793612 - 29793672
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt 367  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| ||||| |||||||||||    
T  29793612 gggccaatttgtattgacttatttgagcttatctactgacataaacacttgtgagactatt 29793672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 46852198 - 46852143
Alignment:
Q  309 gcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagact 364  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||  |||||||    
T  46852198 gcctatttggattgacttatttaaacttatctagtggcataaacactcctgagact 46852143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 52014036 - 52013981
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattca 369  Q
    |||| ||| ||||||||||||||||||| ||||||| ||||  |||||||||||||    
T  52014036 tttggattaacttatttgagcttatctattggcataaacacgtgtgagactattca 52013981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 9174965 - 9174904
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagag 375  Q
    |||| ||||||||||||||||||||||| | ||||| || || |||||||||||||| ||||    
T  9174965 tttggattgacttatttgagcttatctattagcataaacgctcgtgagactattcaaaagag 9174904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 11297117 - 11297167
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtggcatagacactggtgagact 364  Q
    |||| |||||||||||| |||||||||||||||||| ||||| || |||||    
T  11297117 tttgaattgacttatttaagcttatctagtggcataaacacttgtaagact 11297167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 36796628 - 36796678
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtggcatagacactggtgagact 364  Q
    |||| ||||||||||||||||||||||| || |||| ||||| ||||||||    
T  36796628 tttggattgacttatttgagcttatctaatgacataaacacttgtgagact 36796678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 31723958 - 31723901
Alignment:
Q  310 cctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt 367  Q
    |||||||| |||||||||||||||||||| || | ||||| |||||  ||||||||||    
T  31723958 cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatt 31723901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 11457241 - 11457197
Alignment:
Q  320 ttgacttatttgagcttatctagtggcatagacactggtgagact 364  Q
    |||||||||||||||||||||| ||||| | ||||| ||||||||    
T  11457241 ttgacttatttgagcttatctattggcagaaacacttgtgagact 11457197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 14706201 - 14706253
Alignment:
Q  310 cctatttgcattgacttatttgagcttatctagtggcatagacactggtgaga 362  Q
    |||||||| ||||||||||||||||||| ||| || |||| ||||| ||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 51929898 - 51929837
Alignment:
Q  306 tgggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactatt 367  Q
    ||||||| |||| ||||||||||||||||||||||| | ||||| ||||| ||||| |||||    
T  51929898 tgggcctgtttggattgacttatttgagcttatctattagcataaacacttgtgaggctatt 51929837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 22667558 - 22667485
Alignment:
Q  308 ggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg 381  Q
    |||||||||  |||| |||||||||||||||||| || ||||  |||| |||||||| ||  ||||||||||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg 22667485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 22724197 - 22724124
Alignment:
Q  308 ggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg 381  Q
    |||||||||  |||| |||||||||||||||||| || ||||  |||| |||||||| ||  ||||||||||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg 22724124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 13709757 - 13709825
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatga 382  Q
    ||||||| |||||||||||  ||||||| ||| |||  |||| ||||||||||| | ||||||||||||    
T  13709757 tttgcatcgacttatttgaatttatctactgggataagcacttgtgagactatttaggagagtttatga 13709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 12111125 - 12111089
Alignment:
Q  305 atgggcctatttgcattgacttatttgagcttatcta 341  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12111125 atgggcctatttggattgacttatttgagcttatcta 12111089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 10016761 - 10016701
Alignment:
Q  325 ttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 385  Q
    |||||||||||||||||  |||||| ||||| |||||||||||  |||||| | |||||||    
T  10016761 ttatttgagcttatctacaggcataaacacttgtgagactatttcagagagctaatgaaaa 10016701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 47146100 - 47146042
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgagacta 365  Q
    ||||||||||| |||||||||||||| ||||| || |||||||  |||| |||||||||    
T  47146100 gggcctatttggattgacttatttgaacttatatattggcataagcacttgtgagacta 47146042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 33534096 - 33534161
Alignment:
Q  320 ttgacttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 385  Q
    ||||||||||||||||||||||||| ||||   ||| |||||| ||||  |||||| |||||||||    
T  33534096 ttgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaa 33534161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 46187840 - 46187897
Alignment:
Q  324 cttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatg 381  Q
    |||||||||||||||||| ||||||| |||||  ||||||| || ||||| |||||||    
T  46187840 cttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatg 46187897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 23983899 - 23983931
Alignment:
Q  309 gcctatttgcattgacttatttgagcttatcta 341  Q
    ||||||||| |||||||||||||||||||||||    
T  23983899 gcctatttgaattgacttatttgagcttatcta 23983931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 23990594 - 23990626
Alignment:
Q  309 gcctatttgcattgacttatttgagcttatcta 341  Q
    ||||||||| |||||||||||||||||||||||    
T  23990594 gcctatttgaattgacttatttgagcttatcta 23990626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 28810366 - 28810420
Alignment:
Q  307 gggcctatttgcattgacttatttgagcttatctagtggcatagacactggtgag 361  Q
    |||||| |||| |||||||||||||||||| |||| ||||||| ||||| |||||    
T  28810366 gggcctgtttggattgacttatttgagcttctctattggcataaacacttgtgag 28810420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 9174970 - 9174929
Alignment:
Q  308 ggcctatttgcattgacttatttgagcttatctagtggcata 349  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  9174970 ggcctatttggatttacttatttgagcttatctattggcata 9174929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 15370238 - 15370279
Alignment:
Q  308 ggcctatttgcattgacttatttgagcttatctagtggcata 349  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  15370238 ggcctgtttggattgacttatttgagcttatctactggcata 15370279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 28803445 - 28803478
Alignment:
Q  308 ggcctatttgcattgacttatttgagcttatcta 341  Q
    |||||||||| |||||||||||||||||||||||    
T  28803445 ggcctatttggattgacttatttgagcttatcta 28803478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 36677802 - 36677730
Alignment:
Q  314 tttgcattgacttatttgagcttatctagtgg-catagacactggtgagactattcaagagagtttatgaaaa 385  Q
    |||| ||| ||||||||||| ||||||| | | ||||  |||| ||||||||||||||||||| |||||||||    
T  36677802 tttggattaacttatttgagtttatctatttgacataagcacttgtgagactattcaagagagcttatgaaaa 36677730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University