View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524_low_3 (Length: 379)
Name: NF4524_low_3
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 44467585 - 44467237
Alignment:
| Q |
19 |
gacacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacacagttgctgcatctttgtctatatctcag |
118 |
Q |
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| T |
44467585 |
gacacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacacagttgctgcatctttgtctgtatctcag |
44467486 |
T |
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| Q |
119 |
caacattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaggatgatgctacaaatcctaatttgtggcttcagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44467485 |
caacattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaagatgatgctacaaatcctaatttgtggcttcagt |
44467386 |
T |
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| Q |
219 |
gcccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467385 |
gcccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgt |
44467286 |
T |
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| Q |
319 |
tgaagataattatgatgagatgcattcatttttcgatacagttgatgat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467285 |
tgaagataattatgatgagatgcattcatttttcgatacagttgatgat |
44467237 |
T |
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