View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4524_low_4 (Length: 356)
Name: NF4524_low_4
Description: NF4524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4524_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 26414351 - 26414002
Alignment:
| Q |
1 |
cttttcctatcactgcctttgattttgcggtgtatatatctttgcactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgat |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26414351 |
cttttcctatcactacctttgattttgcggtgtatatatctttgcactgatgcaaatatgtatttttatta---atttaagaaatgacaagaactatgat |
26414255 |
T |
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| Q |
101 |
actgtgttaaattaatgcagatgattttcattttcgttcgtagctgatatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414254 |
actgtgttaaattaatgcagatgattttcattttggttcgtagctcatatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccac |
26414155 |
T |
|
| Q |
201 |
cggtgactaatttaacccatatcgcgttttaggcagatcccagacaatccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgcca |
300 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414154 |
cggtgactaatttaacctatatcgcgctttaggcagatcccagacaatccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgcca |
26414055 |
T |
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| Q |
301 |
tacgataatcctcaagtctgaatttgtttcttgatgcttctctctgctcctcc |
353 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
26414054 |
tacgataatcctcaagtctgaatttttttcttgatgcttctctctgttcctcc |
26414002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 27986636 - 27986795
Alignment:
| Q |
16 |
cctttgattttgcggtgtatatat--ctttgcactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgatactgtgttaaatt |
113 |
Q |
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|||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||| || | | |
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| T |
27986636 |
ccttagattttgcggtgtatatatatctttgcacttatacaaatatgtatttttatta---atttaagacattacaagaactgtgatcctccc---acct |
27986729 |
T |
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| Q |
114 |
aatgcagatgattttcattttcgttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
179 |
Q |
| |
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|||||| |||||||||||||| |||| |||||||| |||||| | |||||||||||||||||||| |
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| T |
27986730 |
aatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
27986795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 28073168 - 28073327
Alignment:
| Q |
16 |
cctttgattttgcggtgtatatat--ctttgcactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgatactgtgttaaatt |
113 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||| || | | |
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| T |
28073168 |
ccttagattttgcggtgtatatatatctttgcacttatacaaatatgtatttttatta---atttaagacattacaagaactgtgatcctccc---acct |
28073261 |
T |
|
| Q |
114 |
aatgcagatgattttcattttcgttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
179 |
Q |
| |
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|||||| |||||||||||||| |||| |||||||| |||||| | |||||||||||||||||||| |
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| T |
28073262 |
aatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
28073327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 1536743 - 1536650
Alignment:
| Q |
228 |
tttaggcagatcccagacaatccgaatctgctgc-tatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctg |
320 |
Q |
| |
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||||||| ||||||| |||| ||||| ||||| |||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
1536743 |
tttaggcggatcccaatcaattcgaataggctgcctatgtctgtagctaattatggaacctgccgcctgtgccatataataatcctcaagtctg |
1536650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 3417170 - 3417101
Alignment:
| Q |
32 |
gtatatatctttgcactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
103 |
Q |
| |
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|||||||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
3417170 |
gtatatatatttgcatctatacaaatatgtattttt--tattaatttaagaaatgacaagaactatgctact |
3417101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 22022568 - 22022602
Alignment:
| Q |
69 |
ttattaatttaagaaatgacaagaactatgatact |
103 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
22022568 |
ttattaatttaagaaatgacaagaactatgctact |
22022602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 44472480 - 44472527
Alignment:
| Q |
53 |
caaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
103 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
44472480 |
caaatatgtatttttat---taatttaagaaatgacaagaaccatgctact |
44472527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 6507954 - 6507907
Alignment:
| Q |
53 |
caaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
103 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
6507954 |
caaatatgtatttttatta---atttaagaaatgacaagaaccatgctact |
6507907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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