View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4525-Insertion-3 (Length: 387)

Name: NF4525-Insertion-3
Description: NF4525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4525-Insertion-3
NF4525-Insertion-3
[»] chr5 (2 HSPs)
chr5 (228-307)||(188130-188208)
chr5 (231-303)||(15446053-15446124)
[»] chr6 (1 HSPs)
chr6 (231-303)||(28669167-28669238)
[»] chr2 (1 HSPs)
chr2 (231-310)||(19245462-19245540)
[»] chr3 (1 HSPs)
chr3 (238-303)||(26207465-26207529)
[»] chr4 (1 HSPs)
chr4 (228-278)||(18437757-18437806)
[»] scaffold0684 (1 HSPs)
scaffold0684 (231-303)||(5406-5477)
[»] scaffold0163 (1 HSPs)
scaffold0163 (231-303)||(2641-2712)
[»] chr8 (1 HSPs)
chr8 (231-303)||(31148652-31148723)
[»] chr1 (1 HSPs)
chr1 (231-303)||(22789058-22789129)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 188208 - 188130
Alignment:
Q  228 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacat 307  Q
    |||||||||||||||| ||||||||||||| | |||||||| | ||||||||||| |||  |||||||||||||||||||    
T  188208 aaatgatgaagatgaaagtgttgatatgatggaagataatccatataattgacga-tttattcgtgatttatgattacat 188130  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 15446053 - 15446124
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    ||||||||| ||||||||||||||||  || ||||||| | |||||||| ||  ||| |||||||||||||||    
T  15446053 tgatgaagacgaacgtgttgatatgacgggggataatccatataattgaaga-attcttcgtgatttatgatt 15446124  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 28669167 - 28669238
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    ||||||||| |||| |||||||||||| || ||||||||| ||||||||||| |||| |||||||||||||||    
T  28669167 tgatgaagacgaacatgttgatatgatgggggataatctatataattgacga-tttcttcgtgatttatgatt 28669238  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 19245462 - 19245540
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacatcta 310  Q
    ||||||||| ||||||||||||||||| || ||||||| | ||||||||| | |||| ||||||||||||||| ||||||    
T  19245462 tgatgaagacgaacgtgttgatatgataggggataatccatataattgac-aatttcttcgtgatttatgattgcatcta 19245540  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 26207465 - 26207529
Alignment:
Q  238 gatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    |||| |||||||||||||||||| ||||||| | ||||||||||| |||| |||||||||||||||    
T  26207465 gatggacgtgttgatatgattggggataatccatataattgacga-tttcttcgtgatttatgatt 26207529  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 18437806 - 18437757
Alignment:
Q  228 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattg 278  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  18437806 aaatgatgaagatgaacgtgttgatatgattgg-gataatccatataattg 18437757  T

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Target: scaffold0684 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 5477 - 5406
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  5477 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 5406  T

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Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 2641 - 2712
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  2641 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 2712  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 31148652 - 31148723
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||| |||  ||| |||||||||||||||    
T  31148652 tgatgaagatgaacatgttgatatgatggatgataatccatataattggcga-cttcttcgtgatttatgatt 31148723  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 22789058 - 22789129
Alignment:
Q  231 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 303  Q
    |||||||||||||| |||||| ||||| || ||||||||| ||||||| |||  ||| | |||||||||||||    
T  22789058 tgatgaagatgaacttgttgacatgatgggggataatctatataattggcga-cttctttgtgatttatgatt 22789129  T

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