View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4525_low_11 (Length: 269)

Name: NF4525_low_11
Description: NF4525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4525_low_11
NF4525_low_11
[»] chr7 (3 HSPs)
chr7 (18-248)||(21601260-21601495)
chr7 (38-111)||(12421519-12421592)
chr7 (54-110)||(21587315-21587371)
[»] chr6 (1 HSPs)
chr6 (20-125)||(18025128-18025233)
[»] chr3 (12 HSPs)
chr3 (25-107)||(19626093-19626175)
chr3 (36-125)||(19653548-19653636)
chr3 (36-107)||(19646593-19646664)
chr3 (36-109)||(19609571-19609643)
chr3 (18-125)||(19603664-19603770)
chr3 (18-140)||(19617195-19617320)
chr3 (25-125)||(19549184-19549284)
chr3 (48-112)||(19557193-19557257)
chr3 (36-125)||(19581345-19581434)
chr3 (20-76)||(19612236-19612292)
chr3 (60-125)||(19539015-19539079)
chr3 (60-125)||(19563430-19563494)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 21601495 - 21601260
Alignment:
Q  18 aaaatattgagaaatatattttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgca--atatgcatagcaaacttcaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |    
T  21601495 aaaatattgagaaatatattttgccatttcttgtgaagattgtatcttaaagctctattatcttttgtttttgcaatatatgcatagcaaacttcaaagt 21601396  T
Q  116 ccattatatatagtaatcatgatatatgattatgccca----tggaatcatggtggtggtccaccgtgatttaatttagagatagcaataaagtgtatct 211  Q
    ||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  21601395 ccattatatatagtaatcatgatatatgattatgcccatatttggtatcatggtggtggtccaccgtgatttaatttacaga-agcaacaaagtgtatct 21601297  T
Q  212 ttcagaaaatcacaagtgatcatcgtgattttaacat 248  Q
    |||| ||||||||   || ||||||||||||| ||||    
T  21601296 ttcaaaaaatcacggttggtcatcgtgattttgacat 21601260  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 12421519 - 12421592
Alignment:
Q  38 ttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttca 111  Q
    ||||||||| |||||||||||  |||||||||||||||| | ||||||| |||  |||||||||||||||||||    
T  12421519 ttgccattttttgtgaagatttcatcttagagctctattttattttgttcttgagatatgcatagcaaacttca 12421592  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 21587315 - 21587371
Alignment:
Q  54 agattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttc 110  Q
    ||||| ||||||||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  21587315 agattttatcttagaactctattatcttttgttcttgcattatgcattgcaaacttc 21587371  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 18025233 - 18025128
Alignment:
Q  20 aatattgagaaatatattttgccatttctt-gtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattcca 118  Q
    ||||||||||||||| ||||||||||| || ||||||||| ||||||||| ||||||||||||||||| |  ||||||| ||| ||||||| ||||| ||    
T  18025233 aatattgagaaatatgttttgccatttttttgtgaagattttatcttagaactctattatcttttgttctcccaatatgaataacaaactttaaatt-ca 18025135  T
Q  119 ttatata 125  Q
    |||||||    
T  18025134 ttatata 18025128  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 19626175 - 19626093
Alignment:
Q  25 tgagaaatatattttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaac 107  Q
    |||||||| | ||||||||||| || |||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  19626175 tgagaaatgtgttttgccattttttatgaagattttatcttatagctctattatcttttgttttcacaatatgcatagcaaac 19626093  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 19653636 - 19653548
Alignment:
Q  36 ttttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattccattatata 125  Q
    ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||| || |||||||||    
T  19653636 ttttgccattttttatgaagattttatcttatagctctattatcttttgttttcgcaatatgcatagaaaactccaagtt-cattatata 19653548  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 19646664 - 19646593
Alignment:
Q  36 ttttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaac 107  Q
    ||||||||||| || |||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  19646664 ttttgccattttttatgaagattttatcttatagctctattatcttttgttttcacaatatgcatagcaaac 19646593  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 19609643 - 19609571
Alignment:
Q  36 ttttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaactt 109  Q
    ||||||||||| ||||||||||| |||||||||||||||||||  |||||||| |||||||||| |||||||||    
T  19609643 ttttgccattt-ttgtgaagattttatcttagagctctattattgtttgttttcgcaatatgcacagcaaactt 19609571  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 19603770 - 19603664
Alignment:
Q  18 aaaatattgagaaatatattttgccatttcttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattcc 117  Q
    ||||||||| ||||| | ||||||||||| |||| || ||| ||||||||| |||||||||  |||||| | |||||||||||| |||||||||| || |    
T  19603770 aaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaactt-c 19603672  T
Q  118 attatata 125  Q
    ||||||||    
T  19603671 attatata 19603664  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 19617320 - 19617195
Alignment:
Q  18 aaaatattgagaaatatattttgccatttcttgt----gaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaa 113  Q
    |||||||||  |||||||||||||||||| || |    ||||||| |||||| ||| | ||||||| |||||||| |||||||||||||||||||||||     
T  19617320 aaaatattggaaaatatattttgccattttttttttttgaagattttatctttgagtt-tattatcgtttgttttcgcaatatgcatagcaaacttcaag 19617222  T
Q  114 ttccattatata-tagtaatcatgatat 140  Q
    || ||||||||| ||||| |||||||||    
T  19617221 tt-cattatatagtagtagtcatgatat 19617195  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 19549284 - 19549184
Alignment:
Q  25 tgagaaatatattttgccatttctt-gtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattccattata 123  Q
    |||||||| | ||||||||||| || ||||||||| ||| ||||| ||||||||||||||||| ||| |||||| ||| |||||||||| || |||||||    
T  19549284 tgagaaatgtgttttgccatttttttgtgaagattttattttagaactctattatcttttgttcttgaaatatgaataacaaacttcaagtt-cattata 19549186  T
Q  124 ta 125  Q
    ||    
T  19549185 ta 19549184  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 19557257 - 19557193
Alignment:
Q  48 ttgtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaa 112  Q
    ||||||||||| ||||||||| ||||||||||||||||| | | |||||| ||| ||||||||||    
T  19557257 ttgtgaagattttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaa 19557193  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 19581434 - 19581345
Alignment:
Q  36 ttttgccatttctt-gtgaagattgtatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattccattatata 125  Q
    ||||||||||| || ||||| ||| |||||||   ||||||||| ||||||| | ||||||||||||||||||||||| || |||||||||    
T  19581434 ttttgccatttttttgtgaaaattttatcttaagactctattattttttgttctcgcaatatgcatagcaaacttcaactt-cattatata 19581345  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 19612292 - 19612236
Alignment:
Q  20 aatattgagaaatatattttgccatttcttgtgaagattgtatcttagagctctatt 76  Q
    ||||||| ||||| | ||||||||||| ||||||||||| |||||||||| ||||||    
T  19612292 aatattgggaaatgtgttttgccattttttgtgaagattttatcttagagttctatt 19612236  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 19539079 - 19539015
Alignment:
Q  60 tatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattccattatata 125  Q
    ||||||||| ||||||||||||||||| | | |||||| ||| |||||||||| || |||||||||    
T  19539079 tatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagtt-cattatata 19539015  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 19563494 - 19563430
Alignment:
Q  60 tatcttagagctctattatcttttgtttttgcaatatgcatagcaaacttcaaattccattatata 125  Q
    ||||||||| ||||||||||||||||| | | |||||| ||| |||||||||| || |||||||||    
T  19563494 tatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagtt-cattatata 19563430  T

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