View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4525_low_3 (Length: 353)

Name: NF4525_low_3
Description: NF4525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4525_low_3
NF4525_low_3
[»] chr2 (9 HSPs)
chr2 (10-239)||(35348092-35348319)
chr2 (10-241)||(35343400-35343628)
chr2 (10-233)||(35355655-35355876)
chr2 (18-166)||(35371569-35371708)
chr2 (10-185)||(35346048-35346220)
chr2 (10-166)||(35374345-35374492)
chr2 (53-99)||(35364350-35364396)
chr2 (154-222)||(35351231-35351299)
chr2 (53-143)||(35368225-35368312)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 35348319 - 35348092
Alignment:
Q  10 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||   ||||||||     
T  35348319 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttctttaatgcaagatacacttgtataaccaaaccaatcacc---gttaccttc 35348223  T
Q  110 accatatccatgctgcttgcactttggagtaatggccaaagaagtggatgccatttttgttttaacgctggctatg-taaaaagtgtatgttgaaaagaa 208  Q
    ||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||  ||||||    
T  35348222 actgtatccatgatgcttgcactttggagtaatagccaaagaaatggatgccatttttgtttttacgctggctatgttaaaaaatgtatgttataaagaa 35348123  T
Q  209 gaaaatggaattagatatacgatatgctaag 239  Q
    |||||||||||||| |||| |||||||||||    
T  35348122 gaaaatggaattagttatatgatatgctaag 35348092  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 35343628 - 35343400
Alignment:
Q  10 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttt 109  Q
    ||||||| ||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||||||||   |||||     
T  35343628 catcatcgccttctttgcatgagtctcgatctccattgtgataattttcttcaatgcaagatacacatgtataactaatccaatcaccgtt---accttc 35343532  T
Q  110 accatatccatgctgcttgcactttggagtaatggccaaagaagtggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaag 209  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  35343531 accatatccatgctgctcgcactttggaataatggccaaagaaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaag 35343432  T
Q  210 aaaatggaattagatatacgatatgctaagat 241  Q
    ||||||||||||| |||| |||||||||||||    
T  35343431 aaaatggaattagttatatgatatgctaagat 35343400  T

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Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 35355655 - 35355876
Alignment:
Q  10 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttt 109  Q
    ||||||| |||||| || | |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    |||||||     
T  35355655 catcatcgccttccatgtaagagtctcgatctccattgcgataatcttcttcaatgcaagatacatatgtataaccaaaccaatcacc---attaccttc 35355751  T
Q  110 accatatccatgctgcttgcactttggagtaatggccaaagaagtggatgccatttttgttttaacgctggctatgtaaaaagtgtatgtt-gaaaagaa 208  Q
    | |||||||||||| ||||||||||||||||||||||| |||| | ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||    
T  35355752 atcatatccatgctccttgcactttggagtaatggccatagaaattgatgccattttggttttgacgcttgctatgtaaaaagtgtatgttggaaaagaa 35355851  T
Q  209 gaaaatggaattagatatacgatat 233  Q
    |||||||||||||| |||| |||||    
T  35355852 gaaaatggaattagttatatgatat 35355876  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 35371569 - 35371708
Alignment:
Q  18 ccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttacctttaccatatc 117  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||         ||||||| |||||||     
T  35371569 ccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa---------ttaccttcaccatata 35371659  T
Q  118 catgctgcttgcactttggagtaatggccaaagaagtggatgccatttt 166  Q
    |||| |||||||||||| ||| |||| |||   || |||||||||||||    
T  35371660 catgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt 35371708  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 35346048 - 35346220
Alignment:
Q  10 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttt 109  Q
    ||||||| ||||||||| | || ||| |||| |||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||   ||||     
T  35346048 catcatcgccttccttgtaagaatcttgatccccattgcgataatcttctacaatacaagatacagatgtataaccaaaccaatcaccgttg---ccttc 35346144  T
Q  110 accatatccatgctgcttgcactttggagtaatggccaaagaagtggatgccatttttgttttaacgctggctatg 185  Q
    |||| || ||| ||||||||||  ||||| |||| ||    || ||||||||||||| ||||| | ||||||||||    
T  35346145 accacatgcattctgcttgcacaatggagcaatgaccgtgaaaatggatgccattttagttttgaagctggctatg 35346220  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 35374345 - 35374492
Alignment:
Q  10 catcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttt 109  Q
    ||||||||||||||| | | || ||||| ||||| ||  ||| ||||||||||||||||||||||| ||||||| ||||||||         |||||||     
T  35374345 catcatcaccttcctggtaagaatctcggtctccgttatgataatcttcttcaatgcaagatacacttgtataatcaaaccaa---------ttaccttc 35374435  T
Q  110 accatatccatgctgcttgcactttggagtaatggccaaagaagtggatgccatttt 166  Q
    ||||||| |||| |||||||| ||| ||| |||| |||  ||| |||||||||||||    
T  35374436 accatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccatttt 35374492  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 35364350 - 35364396
Alignment:
Q  53 atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgt 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  35364350 atcttcttcaatgcaagatacacacgtataaccgaaccaatcaccgt 35364396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 35351231 - 35351299
Alignment:
Q  154 tggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaattag 222  Q
    ||||||||||||| ||||| ||||||  ||||| |||||| | | || |||||||||||||||||||||    
T  35351231 tggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatggaattag 35351299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 35368225 - 35368312
Alignment:
Q  53 atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttacctttaccatatccatgctgcttgcactttggagtaatg 143  Q
    |||||||||||| ||||||||| ||||| |||||||||||||| |    | ||||| ||||||| ||||||||||||| ||| ||| ||||    
T  35368225 atcttcttcaatacaagatacagatgtacaaccaaaccaatcaac---ttcaccttcaccatatgcatgctgcttgcagtttagagcaatg 35368312  T

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