View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4525_low_7 (Length: 287)
Name: NF4525_low_7
Description: NF4525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4525_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 48828145 - 48828419
Alignment:
| Q |
14 |
tcatcataataattaagcgatgctccagtaaacannnnnnnggtacatttgaactaaattgacctaaaattgaattaactggattaatttgcccgtttat |
113 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48828145 |
tcatcataataattaagcgatactccagtaaacatttttttggtacacttgaactaaattgacctaaaattgaattaactggattaatttgcccgtttat |
48828244 |
T |
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| Q |
114 |
gactaagttgttttgccaattagcatgttgacatgactttaagagtatcttcaatgctaactaacaaaaacagtgatggtgatactacatgttaagtgtc |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
48828245 |
gactaacttgttttgccaattagcatgttgacatgactttaagagtatcttcaatgctaactaaaaataacagtgatggtgatactacatgttaagtgtc |
48828344 |
T |
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| Q |
214 |
ggagtag------------catcaatgtggtcttcacgtcacatgatgagttttgaagaccaaataacctctcat |
276 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48828345 |
ggagtagcatcaatgtacacatcaatgtggtcttcacgtcacatgatgagttttgaagaccaaataacctctcat |
48828419 |
T |
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