View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4525_low_9 (Length: 277)
Name: NF4525_low_9
Description: NF4525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4525_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 48828894 - 48828628
Alignment:
| Q |
1 |
cctcaacaacgcacattcttctcctctccccataaatgaatgctaatccacatggttattatctcaaaatggatctaacacttaatgaaacaacctggca |
100 |
Q |
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| T |
48828894 |
cctcaacaacgcacattcttctcctctccccataaatgaatgctaatccacatggttattatctcaaaatggatctaacacttaatcaaacaacctggca |
48828795 |
T |
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| Q |
101 |
aatgagatactctgaatattagacnnnnnnntgtgtcatattgacatcaaatgaatttgttagagcaaagctttcaaggaatgcaaacatacaattgtat |
200 |
Q |
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| T |
48828794 |
aatgagatactctgaatattagacaaaaaa-tgtgtcatattgacatcaaatgaatttgttagagcaaagttttcaaggaatgcaaacatacaattgtat |
48828696 |
T |
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| Q |
201 |
ggagtctttattttggatctgtcattagttgttttcacccttaaatttttgtgatgttcactgaattg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48828695 |
ggagtctttattttggatctgtcattagttgttttcacccttaaatttttgtgatgttcactgaattg |
48828628 |
T |
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