View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526-Inserion-1 (Length: 1115)
Name: NF4526-Inserion-1
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526-Inserion-1 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 27710427 - 27710124
Alignment:
| Q |
7 |
attttgaaataagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagttatgttatgtaattaggtacaaattaaataag |
106 |
Q |
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| T |
27710427 |
attttgaagtaagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagttatgttatgtaattagatacaaattaaataag |
27710328 |
T |
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| Q |
107 |
ttggatatttggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaagtgcgaaaaagagaaactgtactaatatagata |
206 |
Q |
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| T |
27710327 |
ttggatatttggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaagtgtgaaaaagagaaactgtactaatatagata |
27710228 |
T |
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| Q |
207 |
gatttgagactcaacgttgctaataagaagttaacatttgagagcggatgcgttgactgtttgggcataatttttcttgtacgtgatgacacaaagcgaa |
306 |
Q |
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| T |
27710227 |
gatttgagac-caacgttgctaataagaagttaacatttgagagcggatgcgttgactgtttgggcataatttttcttgtacgtgaagacacaaagcgaa |
27710129 |
T |
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| Q |
307 |
gacca |
311 |
Q |
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| T |
27710128 |
gacca |
27710124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 365 - 669
Target Start/End: Complemental strand, 27708802 - 27708498
Alignment:
| Q |
365 |
gttgtagtgtttgtttcggcttcttgtgtggtttatggctacttgtttgtttttcctatgtacgacaccctttgtctttgtatttttgtattggcatgcg |
464 |
Q |
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| T |
27708802 |
gttgtagtgtttgtttcggcttcttgtgtggtttatggctacttttttgttttgcctatgtacgacaccctttgtctttgtatttttgtattggcttgcg |
27708703 |
T |
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| Q |
465 |
atgtacatcttgtgcagggttttgcgtcttaataataaaagctgatttaagaaaagggnnnnnnnngctaaggcattcagtaaaagaggatatttgagat |
564 |
Q |
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| T |
27708702 |
atgtacgtcttgtgctgggttttgtgtcttaataataaaagctgatttaaaaaaaggg-aaaaaaagctaaggcattcggtaaaagaggatatttgagat |
27708604 |
T |
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| Q |
565 |
aagaattgaaattcacttctgtttgaaggatttgctcggaatattttaagta-aagaaaatttagcttcctagttctaacttttttcactaaaagattag |
663 |
Q |
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| T |
27708603 |
aagaattgaaattcacttctgtttgaaaaatttgctcggaatattgttagtacaaaaaagtttagcttcctagttctaacttttttcactaaaagattag |
27708504 |
T |
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| Q |
664 |
tagcaa |
669 |
Q |
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| T |
27708503 |
tagcaa |
27708498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 27700029 - 27700113
Alignment:
| Q |
8 |
ttttgaaataagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagttatgttatgtaattaggt |
92 |
Q |
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| T |
27700029 |
ttttgaagtatgggaaaataagattctaaggcttaacaaattcacatgtttatcttcattttacagttatgttatgtaattaggt |
27700113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 27700111 - 27700168
Alignment:
| Q |
117 |
ggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaag |
174 |
Q |
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| T |
27700111 |
ggtttgaatctatgttggtttttgtatatagaagctttgatgctttaaaggcacgaag |
27700168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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