View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4526-Inserion-2 (Length: 983)

Name: NF4526-Inserion-2
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4526-Inserion-2
NF4526-Inserion-2
[»] chr4 (20 HSPs)
chr4 (7-689)||(35036022-35036715)
chr4 (7-607)||(35019823-35020429)
chr4 (802-974)||(35036914-35037086)
chr4 (13-333)||(35029921-35030244)
chr4 (7-186)||(35044183-35044362)
chr4 (356-486)||(35044514-35044644)
chr4 (891-974)||(711958-712041)
chr4 (891-973)||(960890-960972)
chr4 (681-791)||(35036729-35036845)
chr4 (893-974)||(55272395-55272476)
chr4 (890-974)||(46827725-46827809)
chr4 (892-974)||(32728356-32728438)
chr4 (893-974)||(17619171-17619252)
chr4 (895-974)||(3756265-3756344)
chr4 (236-288)||(35044382-35044434)
chr4 (892-974)||(48435598-48435680)
chr4 (892-973)||(49229684-49229765)
chr4 (890-974)||(28988470-28988554)
chr4 (819-857)||(35037203-35037241)
chr4 (542-607)||(35044697-35044762)
[»] chr3 (7 HSPs)
chr3 (885-974)||(9434116-9434205)
chr3 (891-974)||(10457911-10457994)
chr3 (891-974)||(52627996-52628079)
chr3 (892-974)||(25996267-25996349)
chr3 (889-974)||(4190284-4190369)
chr3 (893-974)||(34791829-34791910)
chr3 (890-974)||(24688421-24688505)
[»] chr5 (6 HSPs)
chr5 (892-974)||(17208073-17208155)
chr5 (889-974)||(30622738-30622822)
chr5 (893-974)||(32473413-32473494)
chr5 (889-974)||(7617129-7617214)
chr5 (891-971)||(38470577-38470657)
chr5 (893-974)||(22512305-22512386)
[»] chr2 (13 HSPs)
chr2 (892-974)||(18491704-18491786)
chr2 (890-974)||(43114554-43114638)
chr2 (891-974)||(966853-966936)
chr2 (895-974)||(4299439-4299518)
chr2 (895-974)||(6518488-6518566)
chr2 (895-974)||(11825673-11825752)
chr2 (891-974)||(16803966-16804049)
chr2 (891-974)||(16843248-16843331)
chr2 (895-974)||(41281993-41282072)
chr2 (893-974)||(12415479-12415560)
chr2 (893-974)||(12427539-12427620)
chr2 (890-974)||(34895760-34895844)
chr2 (697-726)||(13294249-13294278)
[»] chr7 (7 HSPs)
chr7 (894-971)||(31408655-31408732)
chr7 (893-974)||(31513287-31513368)
chr7 (890-974)||(27535250-27535334)
chr7 (890-974)||(40236916-40237000)
chr7 (883-974)||(33384860-33384952)
chr7 (889-974)||(5015391-5015476)
chr7 (892-974)||(9216301-9216382)
[»] chr1 (14 HSPs)
chr1 (893-974)||(48119628-48119709)
chr1 (891-974)||(44112675-44112758)
chr1 (891-974)||(45639751-45639834)
chr1 (892-974)||(38113214-38113296)
chr1 (893-974)||(35003294-35003375)
chr1 (893-974)||(38335918-38335999)
chr1 (891-974)||(26585460-26585543)
chr1 (892-974)||(45705824-45705906)
chr1 (893-974)||(46168383-46168464)
chr1 (892-974)||(41065152-41065234)
chr1 (892-974)||(45427764-45427846)
chr1 (891-950)||(14427345-14427404)
chr1 (891-974)||(48498981-48499064)
chr1 (893-974)||(35000132-35000213)
[»] chr8 (8 HSPs)
chr8 (890-974)||(35181513-35181597)
chr8 (891-974)||(34304786-34304869)
chr8 (892-974)||(16603645-16603727)
chr8 (892-974)||(18066737-18066819)
chr8 (889-933)||(19386630-19386674)
chr8 (889-974)||(16358852-16358938)
chr8 (889-974)||(33630012-33630097)
chr8 (689-722)||(10096135-10096168)
[»] chr6 (6 HSPs)
chr6 (891-974)||(33242401-33242484)
chr6 (895-974)||(27441544-27441623)
chr6 (893-974)||(33253913-33253994)
chr6 (890-971)||(3213397-3213478)
chr6 (881-974)||(26670028-26670121)
chr6 (689-726)||(11529644-11529681)
[»] scaffold0003 (1 HSPs)
scaffold0003 (895-974)||(45738-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (893-974)||(35475-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (881-974)||(673-766)


Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 689
Target Start/End: Original strand, 35036022 - 35036715
Alignment:
Q  7 atctatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036022 atctatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccac 35036121  T
Q  107 gtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactcattttggctaaagatgaaga 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35036122 gtcctctcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactcattttggctaaggatgaaga 35036221  T
Q  207 atgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036222 atgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttga 35036321  T
Q  307 tggtgacgaagaagagaatcaaagga------------ttagggactttttcgatctcagcggttcatttgttatatctgacatgttgcggtttttgaga 394  Q
    ||||||||||||||||||||| ||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35036322 tggtgacgaagaagagaatcagaggattagaaaatcctttagggactttttcgatctcagcggttcatttgttatatctgacatgttgcggttttttaga 35036421  T
Q  395 tggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaaga 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036422 tggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaaga 35036521  T
Q  495 aacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagccac 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35036522 aacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagcaac 35036621  T
Q  595 ttgtctggtatgttagtttactcccacccaaaaacataaagcaagtaattgaatccacttccacttgnnnnnnnactgaaaaaactcacttttta 689  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  35036622 ttgtctggtatgttagtttactcccacccaaaaacataaagcgagtaattgaatccacttccacttg-tttttaactgaaaaaactcacttttta 35036715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 7 - 607
Target Start/End: Original strand, 35019823 - 35020429
Alignment:
Q  7 atctatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccac 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||  ||||||| || |||||||| ||     
T  35019823 atctatagcctttgaaatcatgggttataactcttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaattgccactgttcat 35019922  T
Q  107 gtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactcattttggctaaagatgaaga 206  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||| ||||| ||||||||| ||||||||||||    
T  35019923 gtcctctcagctcaacggatagatatgcttaaacatgtaatggaatctgaggtgaaagaagctatgaaagagagttattcattttggttaaagatgaaga 35020022  T
Q  207 atgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttga 306  Q
    |||| |||||||||||||| |   |||||||||||||| |||||||||  || |||||||| |||||| | | ||| || |||| ||| |||  ||||||    
T  35020023 atgagggtaactctgaaagggtatttacggaaatgaaagaatggtttgcagacatagcgattaacgttgtttttaggacagtaatgggaaaacgttttga 35020122  T
Q  307 tggtgacgaagaagagaatcaaag------------gattagggactttttcgatctcagcggttcatttgttatatctgacatgttgcggtttttgaga 394  Q
    |||||| || ||||||||||||||            |||||| || |||||  |||| || |||||||||||| | ||||||||||| | || |||||||    
T  35020123 tggtgatgaggaagagaatcaaaggataagaaaaatgattagagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgaga 35020222  T
Q  395 tggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaaga 494  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||   |||||||| ||||| |||||||  || ||||    
T  35020223 tggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaacataagaaga 35020322  T
Q  495 aacct-gccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagcca 593  Q
    |  || | ||  | |||    || |||||||||||||| ||||||||||||||||   ||||| ||||||| ||||||||||| || |||||||||||||    
T  35020323 attctggtcgtgaacaa----gatttcatggatgtgctgctttcaaccgttgatg---aagatttagatggccgtgatgctgatactacaatcaaagcca 35020415  T
Q  594 cttgtctggtatgt 607  Q
    ||||| ||||||||    
T  35020416 cttgtatggtatgt 35020429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 802 - 974
Target Start/End: Original strand, 35036914 - 35037086
Alignment:
Q  802 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaaggaaaatgt 901  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35036914 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaagaaaaatgt 35037013  T
Q  902 tacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  35037014 tacatgagcaccctttaaccatacactctatt-gtacaccccatgcattaaggatattttggtaaattcatctc 35037086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 35029921 - 35030244
Alignment:
Q  13 agcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtccta 112  Q
    ||||||||||||  | || ||||||| ||||||| | ||| | ||||| || |||||||||||||||||| ||||||| |||||||| ||||| |||||     
T  35029921 agcctttgaaattttagggtataacttttccatgataggtttcagtccttatggttcttattggcgtacagtgcgtaaaatcgccaccgtccatgtcctc 35030020  T
Q  113 tcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactcattttggctaaagatgaaga---atg 209  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||||||||||| ||||| ||||||||| | ||||||||||   |      
T  35030021 tcagctcaacggatagatatgcttaaacatgtaatggaatctgaggtggaagaagctatgaaagagagttattcattttggttgaagatgaagagcgagc 35030120  T
Q  210 atggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatgg 309  Q
    | |||||||||||||| |   |||||||||||||| |||||||||  || |||||||| |||||| | | ||| || |||| ||| |||  |||||||||    
T  35030121 agggtaactctgaaagggtatttacggaaatgaaagaatggtttgcagacatagcgattaacgttgtttttaggacagtaatgggaaaacgttttgatgg 35030220  T
Q  310 tgacgaagaagagaatcaaaggat 333  Q
    ||| || |||||||||||||||||    
T  35030221 tgatgaggaagagaatcaaaggat 35030244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 35044183 - 35044362
Alignment:
Q  7 atctatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccac 106  Q
    ||||||||||||||||||  |||| ||||||| ||||||| | ||| | ||||| |||||||| |||||||| ||| ||||||||||  ||||  |||||    
T  35044183 atctatagcctttgaaattttgggatataacttttccatgataggtttcagtccttacggttcctattggcgcacagtgcgtaagatatccaccatccac 35044282  T
Q  107 gtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactc 186  Q
    ||||| || ||   ||| ||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||| ||||    
T  35044283 gtcctctccgccacacggatagatatgcttaaacatgttatggaaactgaggttaagaatgcgatgaaagatagtcactc 35044362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 356 - 486
Target Start/End: Original strand, 35044514 - 35044644
Alignment:
Q  356 ggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgatt 455  Q
    ||||| ||||||||||||||   ||||| |||||| |||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||| |    
T  35044514 ggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagttggatgagt 35044613  T
Q  456 ttgttcaagtttggctcgatcaacacaaacg 486  Q
    ||||||||| |||| | ||||||||||||||    
T  35044614 ttgttcaaggttggattgatcaacacaaacg 35044644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 711958 - 712041
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  711958 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccctatgcattaaggatattttggtaaattcatctc 712041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 891 - 973
Target Start/End: Complemental strand, 960972 - 960890
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatct 973  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||||| ||||||||||||||||||||||    
T  960972 aaggaaaatgttacatgaacaccctttaatcatacactctatt-gtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 681 - 791
Target Start/End: Original strand, 35036729 - 35036845
Alignment:
Q  681 cactttttaattgcagggtaattttgtaagtttcatttaattaactnnnnnnnctaaaatcccttttcaatgt-at-----tattaagctaacaactaat 774  Q
    |||||||| |||||||||||||||||||||||||||||||||||||       | |||||| ||||||||| | ||     |||||||||||||||||||    
T  35036729 cactttttgattgcagggtaattttgtaagtttcatttaattaactaaaaaaacaaaaatctcttttcaatatcatggatgtattaagctaacaactaat 35036828  T
Q  775 ataatttcatactagta 791  Q
    |||||||||||||||||    
T  35036829 ataatttcatactagta 35036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 55272476 - 55272395
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||  |||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattg-tacaccccatgcattaaggatattttggtaaattcatctc 55272395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 890 - 974
Target Start/End: Complemental strand, 46827809 - 46827725
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||| || |||||||||||| |||||    
T  46827809 aaaggaaaatgttacatgaacaccctttaatcatacactctatt-gtacacccaatgcattaagaacgttttggtaaatttatctc 46827725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 32728356 - 32728438
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||  |||||| ||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattg-tacaccccatgcattaaggacattttagtaaattcatctc 32728438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 17619252 - 17619171
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||  ||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattg-tacaccccatgcattaaggatattttggtaaattcatctc 17619171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 3756344 - 3756265
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||| ||||| ||||||| |||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattaaggatattttagtaaatttatctc 3756265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 35044382 - 35044434
Alignment:
Q  236 gaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggt 288  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| |||||||||    
T  35044382 gaaatgaagaaatggtttggtgatatagcgataaacgtgatgtttagaacggt 35044434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 892 - 974
Target Start/End: Complemental strand, 48435680 - 48435598
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||| ||||||||||||||  ||||| || |||| |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattg-tacaccccatgcattagggacatattggtaaattcatctc 48435598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 892 - 973
Target Start/End: Complemental strand, 49229765 - 49229684
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatct 973  Q
    |||||||||||| |||||||  |||||| ||||||| |||||| |||||  ||||||||||||| ||| ||||||||||||||    
T  49229765 aggaaaatgttatatgaacatcctttaatcatacaccctattg-tacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 890 - 974
Target Start/End: Original strand, 28988470 - 28988554
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||  ||||||| ||  | ||||| |||||||| || |||||||||| ||||||||||||    
T  28988470 aaaggaaaatgttacatgaacaccctttattcatacac-ctcattgtacaccccatgcactagggacattttgataaattcatctc 28988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 819 - 857
Target Start/End: Original strand, 35037203 - 35037241
Alignment:
Q  819 aaaatacacgaatatagagaaaatacctcaatagctaaa 857  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35037203 aaaattcacgagtatagagaaaatacctcaatagctaaa 35037241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 35044697 - 35044762
Alignment:
Q  542 gttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgt 607  Q
    |||||||||||||| || ||||||||||||||||  || || |||||| | || ||||||||||||    
T  35044697 gttgatgatcaagaaattgatggtcgtgatgctggaactactatcaaaactacgtgtctggtatgt 35044762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 885 - 974
Target Start/End: Original strand, 9434116 - 9434205
Alignment:
Q  885 tttcaaaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  9434116 tttcaaaaggaaaatgttacatgaacaccctttaatcatacactctatt-gtacaccccatgcattagggacattttggtaatttcatctc 9434205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Complemental strand, 10457994 - 10457911
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||  ||||| ||||||| ||||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  10457994 aaggaaaatgttacatgaacaccttttaatcatacaccctatt-gtacaccccatgcattaaggatattttggtaaatttatctc 10457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 891 - 974
Target Start/End: Complemental strand, 52628079 - 52627996
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||| ||||||| |||||| ||||||  |||||| |||||| ||||||||||| | |||||||||||||||||||    
T  52628079 aaggaaaatgttacgtgaacaccctttaatcatacatcctattg-tacacctcatgcattaagtatattttggtaaattcatctc 52627996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 25996267 - 25996349
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||| |||||| ||||||   ||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattg-tacaccccatatattaaggacattttggtaaattcatctc 25996349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 889 - 974
Target Start/End: Complemental strand, 4190369 - 4190284
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||| |||||||  ||| ||||  || |||||||||||||||||||    
T  4190369 aaaaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccttatgtattagagatattttggtaaattcatctc 4190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 34791829 - 34791910
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||||||  |||| ||| ||| ||||||||| |||||||||  ||| ||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatatt-gtaaacctcatgcattagggacattttaataatttcatctc 34791910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 890 - 974
Target Start/End: Complemental strand, 24688505 - 24688421
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||    ||||||| ||| |||||||| ||| |||| ||| |||||||||| ||||||||    
T  24688505 aaaggaaaatgttacatgaacaccctttatttctacactccatt-gtacaccctatgtattagggatattttggtaagttcatctc 24688421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 17208073 - 17208155
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||| ||||||| |||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattg-tacaccccatgcattaaggacattttggtaaattcatctc 17208155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 889 - 974
Target Start/End: Complemental strand, 30622822 - 30622738
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctattggtacacccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||| |||  ||||||||||||||| ||||||||||||| |||||    
T  30622822 aaaaggaaaatgttacatgaacatcctttaatcatacaccctatt-gtaagcccatgcattaaggatattttggtaaatttatctc 30622738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 32473494 - 32473413
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||||||  |||| ||||||| ||||||||| ||| |||||||||| ||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttatt-gtacaccacatgcattagggatattttggtaatttcatctc 32473413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 889 - 974
Target Start/End: Original strand, 7617129 - 7617214
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||||| |||||  ||||||||| |||  |||| |||||| |||| ||| |||||||||| ||||||||    
T  7617129 aaaaggaaaatgttacatgaacaccctttattcatacactccatt-atacaccccatgtattagggatattttggtaagttcatctc 7617214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 891 - 971
Target Start/End: Original strand, 38470577 - 38470657
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcat 971  Q
    |||||||||||||||| ||||| |||||  |||||| || |||| ||||||| ||| |||||||| ||||||||||||||||    
T  38470577 aaggaaaatgttacataaacaccctttattcatacattccattg-tacaccccatgtattaaggatattttggtaaattcat 38470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 22512305 - 22512386
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||  | ||||||| ||| |||||| ||||| |||| ||| |||||||||| ||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccatt-gtacactccatgtattagggatattttggtaagttcatctc 22512386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 18491704 - 18491786
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||| |||||| ||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacacctcatgcattaagaacattttggtaaattcatctc 18491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 890 - 974
Target Start/End: Original strand, 43114554 - 43114638
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  43114554 aaaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattagggacattttggtaatttcatctc 43114638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 891 - 974
Target Start/End: Complemental strand, 966936 - 966853
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  966936 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattaagaacgttttggtaaattcatctc 966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 4299518 - 4299439
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||| |||||||| |||||| ||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattg-tacactccatgcattaatgacattttggtaaattcatctc 4299439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 6518566 - 6518488
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||    
T  6518566 aaaatgttacatgaacac-ctttaatcatacactctattg-tacaccccatgcattagggacattttggtaatttcatctc 6518488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 11825752 - 11825673
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattagggacattttggtaatttcatctc 11825673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 16803966 - 16804049
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||| ||| ||||||||    
T  16803966 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacatcccatgcattagggacattttgataatttcatctc 16804049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 16843248 - 16843331
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||| ||| ||||||||    
T  16843248 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacatcccatgcattagggacattttgataatttcatctc 16843331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 41282072 - 41281993
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||| ||| ||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattagggacattttgataatttcatctc 41281993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 12415560 - 12415479
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||||||  |||| ||||| ||||||||||| |||||||||||||| || |||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttatt-gtacaccccatgcattagggacattttggtaattttatctc 12415479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 12427620 - 12427539
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||||||  |||| ||||| ||||||||||| |||||||||||||| || |||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttatt-gtacaccccatgcattagggacattttggtaattttatctc 12427539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 890 - 974
Target Start/End: Complemental strand, 34895844 - 34895760
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||| ||||||||||||||  ||||| || |||| |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  34895844 aaaggaaagtgttacatgaacaccatttaatcacacaccctattg-tacaccccatgcattagggacatattggtaaattcatctc 34895760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 726
Target Start/End: Complemental strand, 13294278 - 13294249
Alignment:
Q  697 ggtaattttgtaagtttcatttaattaact 726  Q
    ||||||||||||||||||||||||||||||    
T  13294278 ggtaattttgtaagtttcatttaattaact 13294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 894 - 971
Target Start/End: Complemental strand, 31408732 - 31408655
Alignment:
Q  894 gaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcat 971  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctatt-gtacatcccatgcattaaggatattttggtaaattcat 31408655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 31513287 - 31513368
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattg-gtacacccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||||||||| |||||||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtatac-cccatgcattaaggatattttggtaaattcatctc 31513368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 890 - 974
Target Start/End: Complemental strand, 27535334 - 27535250
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||||| |||||  |||| ||||||||||||| ||||||||    
T  27535334 aaaggaaaatgttacatgaacaccctttaatcatacactctatt-gtacactccatgtgttaaagacattttggtaatttcatctc 27535250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 890 - 974
Target Start/End: Original strand, 40236916 - 40237000
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||| ||||||  ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  40236916 aaaggaaaatgttacatgaacaccctttaatcatacatcctatt-gtacaccccatgcattagggacattttggtaatttcatctc 40237000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 883 - 974
Target Start/End: Original strand, 33384860 - 33384952
Alignment:
Q  883 attttcaaaaggaaaatgttacatgaacactctttaaccatacactc-tattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||| |||||||||||||||||||||||   ||||| ||||||| | ||||| || || |||||||||| |||||||||||||||||||||||    
T  33384860 attttgaaaaggaaaatgttacatgaacatcatttaatcatacacccctattg-tatactccatgcattagggacattttggtaaattcatctc 33384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 889 - 974
Target Start/End: Original strand, 5015391 - 5015476
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||||||||||    ||||||| ||| ||||||| |||| |||| ||| |||||||||| ||||||||    
T  5015391 aaaaggaaaatgttacatgaacactctttatttctacactccatt-gtacacctcatgtattagggatattttggtaagttcatctc 5015476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 9216301 - 9216382
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacacccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||| |||||  | || |  ||||| ||||||||||||||||  || |||||||||| ||||||||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctatt-gtacacccatgcattagagatattttggtaagttcatctc 9216382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 48119628 - 48119709
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattg-tacaccccatgcattaaggatattttggtaaattcatctc 48119709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 44112675 - 44112758
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  44112675 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattagggacattttggtaatttcatctc 44112758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 891 - 974
Target Start/End: Complemental strand, 45639834 - 45639751
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||||||||| ||||||  ||||| ||||| ||||| ||||||||| |||||||||||||||||||    
T  45639834 aaggaaaatgttacatgaacactctttaatcatacatcctatt-gtacaccccatacattaaggatattttggtaaattcatctc 45639751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 892 - 974
Target Start/End: Complemental strand, 38113296 - 38113214
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||| |||||||| |||||| ||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattg-tacaccccatgcattaatgacattttggtaaattcatctc 38113214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 35003294 - 35003375
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||| |||||||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatacattaaggatattttggtaaattcatctc 35003375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 38335918 - 38335999
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||||||  ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattg-tacatcccatgcattaaggatattttggtaaattcatctc 38335999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 26585460 - 26585543
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||| ||||||| ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  26585460 aaggaaaatgttagatgaacattctttaatcatacactatatt-gtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 45705824 - 45705906
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||| |||||||| |||||| |||||| |||||| |||||| |||||||||| |||||||||| ||||||||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctatt-gtacactccatgcattatggacattttgataaattcatctc 45705906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 46168383 - 46168464
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccca-tgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||| |||||| |||| |  |||||| |||||||| ||||||||||| |||||||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattg-tacacccaatgcattaaggatattttggtaaattcatctc 46168464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 892 - 974
Target Start/End: Original strand, 41065152 - 41065234
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||| |||||| ||||||| || || ||||| ||||||||||| || ||||||||||| ||||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgtt-gtacaccccatgcattaggggcattttggtaatttcatctc 41065234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 892 - 974
Target Start/End: Complemental strand, 45427846 - 45427764
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| ||  ||||| ||||||| |||||| ||||| |||||||||| |||||||||||||| ||||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattg-tacactccatgcattagggacattttggtaatttcatctc 45427764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 891 - 950
Target Start/End: Original strand, 14427345 - 14427404
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcatta 950  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||||| |||||||||    
T  14427345 aaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 891 - 974
Target Start/End: Complemental strand, 48499064 - 48498981
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||||||||    ||||||| ||| ||||||| |||| |||| ||| |||||||||| ||||||||    
T  48499064 aaggaaaatgttacatgaacactctttatttctacactccatt-gtacacctcatgtattagggatattttggtaagttcatctc 48498981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 35000213 - 35000132
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacac-ccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||  ||||| ||||||||||||| ||| ||  |||| |||| |||||||||| |||||| |||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctatt-gtatacttcatgtattagggacattttgataaatttatctc 35000132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 890 - 974
Target Start/End: Original strand, 35181513 - 35181597
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  35181513 aaaggaaaatgttacatgaacaccctttaatcatacaccctatt-gtacaccccatgcattagggacattttggtaatttcatctc 35181597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 34304786 - 34304869
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||||||  |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  34304786 aaggaaaatgttacatgaacatcctttaatcatacaccctatt-gtacaccccatgcattagggacattttggtaatttcatctc 34304869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 892 - 974
Target Start/End: Complemental strand, 16603727 - 16603645
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||| |||| |||||| |||||||  ||||  ||||||| ||||||||| ||||||||||||||||||||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttatta-tacaccccatgcattaaagacattttggtaaattcatctc 16603645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 892 - 974
Target Start/End: Complemental strand, 18066819 - 18066737
Alignment:
Q  892 aggaaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||| |||||| |||||| |||||| ||||| |||||| |||| ||| ||||| |||| ||||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctatt-gtacatcccatgtattagggatattttagtaatttcatctc 18066737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 889 - 933
Target Start/End: Complemental strand, 19386674 - 19386630
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctatt 933  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  19386674 aaaaggaaaatgttacatgaacaccctttaatcatacaccctatt 19386630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 889 - 974
Target Start/End: Complemental strand, 16358938 - 16358852
Alignment:
Q  889 aaaaggaaaatgttacat-gaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||| ||||||||||||| ||| || |||||| ||||||| |||||| |||| ||||||||||||| | |||||| ||||||||||||    
T  16358938 aaaaagaaaatgttacattgaagaccctttaatcatacaccctattg-tacatcccatgcattaagaatattttgataaattcatctc 16358852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 889 - 974
Target Start/End: Complemental strand, 33630097 - 33630012
Alignment:
Q  889 aaaaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||| ||||||||||| |||||| |||||| ||||||| ||  | |||||||| |||||||| ||||||||| |||| ||||||||    
T  33630097 aaaagaaaaatgttacacgaacaccctttaatcatacac-ctcattgtacaccctatgcattagggacattttagtaatttcatctc 33630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 722
Target Start/End: Original strand, 10096135 - 10096168
Alignment:
Q  689 aattgcagggtaattttgtaagtttcatttaatt 722  Q
    ||||| ||||||||||||||||||||||||||||    
T  10096135 aattgaagggtaattttgtaagtttcatttaatt 10096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 891 - 974
Target Start/End: Original strand, 33242401 - 33242484
Alignment:
Q  891 aaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||||  ||||| |||||||  ||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  33242401 aaggaaaatgttacatgaacaccatttaatcatacaccttattg-tacaccccatgtattaaggacattttggtaaattcatctc 33242484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 974
Target Start/End: Original strand, 27441544 - 27441623
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||| || ||| |||||||| |||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctatt-gtacatcctatgtattaaggatattttggtaaattcatctc 27441623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 974
Target Start/End: Original strand, 33253913 - 33253994
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    ||||||||||||||||||||  ||||| || |||| |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattg-tacaccccatgcattagggacatattggtaaattcatctc 33253994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 890 - 971
Target Start/End: Original strand, 3213397 - 3213478
Alignment:
Q  890 aaaggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcat 971  Q
    ||||||||||||||||| ||||| |||||  |||||| |||  | |||||||| ||| |||||||| ||||||||||||||||    
T  3213397 aaaggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcat 3213478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 881 - 974
Target Start/End: Complemental strand, 26670121 - 26670028
Alignment:
Q  881 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    ||||||| |||||||||||||||||||||||| |||||  | ||||| ||  | ||||||| |||| |||| ||| |||||||||| ||||||||    
T  26670121 taattttaaaaaggaaaatgttacatgaacaccctttattcctacac-ctcattgtacacctcatgtattagggatattttggtaagttcatctc 26670028  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 11529681 - 11529644
Alignment:
Q  689 aattgcagggtaattttgtaagtttcatttaattaact 726  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  11529681 aattgaagggtaattttgtaaatttcatttaattaact 11529644  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 974
Target Start/End: Complemental strand, 45817 - 45738
Alignment:
Q  895 aaaatgttacatgaacactctttaaccatacactctattggtaca-cccatgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||| || ||| |||||||| |||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctatt-gtacatcctatgtattaaggatattttggtaaattcatctc 45738  T

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Target: scaffold0100 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 974
Target Start/End: Complemental strand, 35556 - 35475
Alignment:
Q  893 ggaaaatgttacatgaacactctttaaccatacactctattggtacaccc-atgcattaaggacattttggtaaattcatctc 974  Q
    |||||||||||||| |||||  ||||| |||||||  ||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattg-tacaccccatgcattagggacatattggtaaattcatctc 35475  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 881 - 974
Target Start/End: Original strand, 673 - 766
Alignment:
Q  881 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattggtacacc-catgcattaaggacattttggtaaattcatctc 974  Q
    ||||||| |||||||||||||||||||||||| |||||  | ||||| ||  | ||||||| |||| |||| ||| |||||||||| ||||||||    
T  673 taattttaaaaaggaaaatgttacatgaacaccctttattcctacac-ctcattgtacacctcatgtattagggatattttggtaagttcatctc 766  T

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