View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526-Inserion-3 (Length: 854)
Name: NF4526-Inserion-3
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526-Inserion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 170 - 854
Target Start/End: Original strand, 34629386 - 34630068
Alignment:
| Q |
170 |
actagtggcagtattcataatcaatatataaatgataatttgacaaataacattatcatacatcacgatattattagtatcaaatgatacgatctaaaat |
269 |
Q |
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| T |
34629386 |
actagtggcagtattcataatcaatatataaatgataatttgacaaataacattatcatacatcacgatatta---gtatcaaatgatacgatctaaaat |
34629482 |
T |
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| Q |
270 |
cattttcaattgtaatattccaatcat-taacttactcttaaagtggtttgggatattgccattataaatcattcagtgagacaaggtacaaaatttccc |
368 |
Q |
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| T |
34629483 |
cattttcaattgtaatattccaatcatgtaacttactcttaaactggtttgggatattgccattataaatcattcagtgagacaaggtacaaaatttccc |
34629582 |
T |
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| Q |
369 |
tatggaaaagtatttcttgcatttaacctaacctacaaagcctcagactccaataaagaatgagttgatcaaagtgaacacattcatttaaagaagaatg |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629583 |
tatggaaaagtatttcttgcatttaacctaacctacaaagcctcagactccaataaagaatgagttgatcaaagtgaacacattcatttaaagaagaatg |
34629682 |
T |
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| Q |
469 |
agtaataaagctaataaagtcgatgcaaaattcagtgctgttatttacgctcctatgactttatggagataacagttgctgcagtaaatagtgcctcttt |
568 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629683 |
agtaataaagctaataaagtcaatgcgaaattcagtgctgttatttacgctcctatgactttatggagataacagttgctgcagtaaatagtgcctcttt |
34629782 |
T |
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| Q |
569 |
cccaatggacagtatctccaaatccctacattatgacagaaaacaaatttgaacgatgccaataaactaaacaaaatattttctacagattatatatgaa |
668 |
Q |
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| T |
34629783 |
cccaatggacagtatctccaaatccctacattatgacagaaaacaaatttgaacgatgccaataaactaaacaaaatattttctacagattatatatgaa |
34629882 |
T |
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| Q |
669 |
aattctggattttcaggatctgttcaaaattcaaagtcttaatatagataatccaagtatggaatcaagctcaattaacattgtttaagtagaacaagcc |
768 |
Q |
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| T |
34629883 |
aattctggattttcaggatctgttcaaaattcaaagtcttgatatagataatgcaagtatggaatcaagctcaattaacattgtttaagtagaacaagcc |
34629982 |
T |
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| Q |
769 |
ataatatcccaaatcagacaaagatagatgcaaaaccaagcaagcgatttaaaagttaaaatcctgagaaatggttttcttaccca |
854 |
Q |
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| T |
34629983 |
ataatatcccaaatcagacaaagatagatgcaaaaccaagcaagcgatttaaaagttaaaatcctgagaaatggttttcttaccca |
34630068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 34629261 - 34629389
Alignment:
| Q |
8 |
ataactggattcattgacttcactacaagtttcttttatggagttcatcttgaaacaatgattttgtttagtgcagttataaatgcaatagttgttcaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34629261 |
ataactggattcattgacttcactacaagtttcttttatggagttcatcttgaagcaatgattttgtttagtgcagttataaatgcaatagttgttcgca |
34629360 |
T |
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| Q |
108 |
tttattcaccaagattaatcttttaacta |
136 |
Q |
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| T |
34629361 |
tttattcaccaagattaatcttttaacta |
34629389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 14298058 - 14298255
Alignment:
| Q |
23 |
gacttcactacaagtttcttttatggagttcatcttgaaacaatgattttgtttagtgcagttataaatgcaatag-ttgttcacatttattcaccaaga |
121 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
14298058 |
gacttaactacaagtttcttttatggagttcatctttaaacaatgattttgtttagtgctgttataaatgcaatggtttgttcacatttattcaccaaga |
14298157 |
T |
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| Q |
122 |
ttaatcttttaactatttgtttatttatttgcataattctgtgtcttcactagtggcagtattcataatcaatatataaatgataatttgacaaataaca |
221 |
Q |
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| T |
14298158 |
ttaatcttttaattatttgttaatttatttgcaaaat--tgtgtcttcacgagtcgtagtatttataatcaatatataaataataatttgacaaataaca |
14298255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 411 - 705
Target Start/End: Original strand, 14298414 - 14298694
Alignment:
| Q |
411 |
tcagactccaataaagaatgagttgatcaaagtgaacacattcatttaaagaagaatgagtaataaagctaataaagtcgatgcaaaattcagtgctgtt |
510 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||| ||| || | | |||| |||||||| |||| || |||| |
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| T |
14298414 |
tcagactccaataaagaatgagttgatcaatgtgaacacattcctttaaggaa--ataatgattaaaactaataaa------------ttcaatgttgtt |
14298499 |
T |
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| Q |
511 |
atttacgctcctatgactttatggagataacagttgctgcagtaaatagtgcctctttcccaatggacagtatctccaaatccctacattatgacagaaa |
610 |
Q |
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|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||| |||||||| |
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| T |
14298500 |
atttacactcctatgacttcatggagataacacatgctgcagtaaatagtgcctcttttccaatggacagtatctccatattcctgcattaagacagaaa |
14298599 |
T |
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| Q |
611 |
acaaatttgaacgatgccaataaactaaacaaaatattttctacagattatatatgaaaattctggattttcaggatctgttcaaaattcaaagt |
705 |
Q |
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| T |
14298600 |
actaatttgaacttttccggtaaactaaacaaaatgttttcaacaggttatatatgaaaattctggattttcaggatctgttcaaaattcaaagt |
14298694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 14298307 - 14298343
Alignment:
| Q |
249 |
tcaaatgatacgatctaaaatcattttcaattgtaat |
285 |
Q |
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| T |
14298307 |
tcaaatgatactatctaaaatcattttcaattgtaat |
14298343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 854
Target Start/End: Original strand, 14298744 - 14298794
Alignment:
| Q |
802 |
aaccaagcaagcgatttaaaagttaaaatcctgagaaatggttttcttaccca |
854 |
Q |
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||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
14298744 |
aaccaaggaagcgatttac--gttataatcctgagaaatggttttcttaccca |
14298794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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