View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526-Inserion-4 (Length: 807)
Name: NF4526-Inserion-4
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526-Inserion-4 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 219 - 807
Target Start/End: Complemental strand, 11352721 - 11352128
Alignment:
| Q |
219 |
cagaattgcgcttaaatggcatacgattacgatgacatttgatatgtaggggtgtggataaagatagaataagccggttcaactttgtgaggtctaaatt |
318 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352721 |
cagaattgcgcttaaatggcatacaactacgatgacatttgatatgctggggtgtggataaagatagaataagccggttcaactttgtgaggtctaaatc |
11352622 |
T |
|
| Q |
319 |
tacttgtgtttataattgggtgcagttctcactttataaaccgatttgtaagtatgagtttgacctgatataaaaatataatggttcgaactaagctcaa |
418 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
11352621 |
tactcgtgtttataagtgggtgcagttttcactttataaaccgatttgtaagtatgagtttgacctaatataaaaatataatggttcgaaataagcttaa |
11352522 |
T |
|
| Q |
419 |
ccctaatccattaaaagattcaatcaccgccaataaagcacagacactctttggataagacgtgtcttgatgtcggacacgtg-tgtgtttgacaccgtc |
517 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||| ||||| ||| |||| | |
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| T |
11352521 |
ccctaatccattaaaggattcaatcaccgccaataaagcacggacactctttgggtaaaacgtgtcctgatgtcggacacgtgttgtgtctgataccgac |
11352422 |
T |
|
| Q |
518 |
acgacattgatacatataattataatgaattaggtgattttctcaacttatatcaatggtgt---catgttagtatctatgtcgtgttcgacgcccgtgt |
614 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||| | |||||| |
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| T |
11352421 |
acgacattgatacatataattacaaggaattaggtgattttctcaacttatattagcggtgtcgacatgttagtatctgtgtcgtgttcgatgtccgtgt |
11352322 |
T |
|
| Q |
615 |
ccatatctttactttatagatcgctgcaaaagagactatgaaactgcacacaacacaccttagtaagtccagtgatctattgagggccatacaattgcaa |
714 |
Q |
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||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352321 |
ccatatctttactttatagatcgatgtaaaagagactatgaaattgcacacaacacaccttagtaagtccagtgatctattgagggccatacaattgcaa |
11352222 |
T |
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| Q |
715 |
tcagactttgatccacgaatcacataggataacactcaatagattccttcc-aaaacccaactagatttcccatgattaccacataaatcaatg |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
11352221 |
tcagactttgatccacgaatcacataggataacactcaatagattccttcctgaaaccctactagatttcccatgattaccacataaatcaatg |
11352128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 11352933 - 11352806
Alignment:
| Q |
8 |
acttttcctttctggtaaccgtgaaaatatatatttgtaatgtgttatagtcaactaacgatggtgatgttgttgttttagattatgataactcttgata |
107 |
Q |
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||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352933 |
acttttcctttcttgtagccgtggaaatatatatttgtaatgtgttatagtcaactgaagatggtgatgttgttgttttagattatgataactcttgata |
11352834 |
T |
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| Q |
108 |
aatcacaatcaagaagatgatggttggg |
135 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11352833 |
aatcacaatcaagaagatgatggttggg |
11352806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 11332977 - 11332852
Alignment:
| Q |
8 |
acttttcctttctggtaaccgtgaaaatatatatttgtaatgtgttatagtcaactaacgatggtgatgttgttgttttagattatgataactcttgata |
107 |
Q |
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|||||||||||||| || | |||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
11332977 |
acttttcctttctgatagacttgaaaatatatatttgtaatgtgttatattcaaccaacgatggtgatgctgttgtttaagattatgataactcttgata |
11332878 |
T |
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| Q |
108 |
aatcacaatcaagaagatgatggttg |
133 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
11332877 |
aatcacaatcaagaagacgatggttg |
11332852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 24645595 - 24645533
Alignment:
| Q |
454 |
aagcacagacactctttggataagacgtgtcttgatgtcggacacgtgt-gtgtttgacaccg |
515 |
Q |
| |
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|||||||||||||||| |||| |||||||||||| |||||||||||||| |||| |||||||| |
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| T |
24645595 |
aagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccg |
24645533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 26562764 - 26562704
Alignment:
| Q |
503 |
gtgtttgacaccgtcacgacattgatacatataattataatgaattaggtgattttctcaa |
563 |
Q |
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||||| ||||||| |||||||| || ||||||||||| | ||||||| ||||||||||||| |
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| T |
26562764 |
gtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaa |
26562704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 8931591 - 8931646
Alignment:
| Q |
508 |
tgacaccgtcacgacattgatacatataattataatgaattaggtgattttctcaa |
563 |
Q |
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|||||||| |||||||| || ||||||||||||| ||||||| || |||||||||| |
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| T |
8931591 |
tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaa |
8931646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 561
Target Start/End: Original strand, 5000555 - 5000668
Alignment:
| Q |
449 |
caataaagcacagacactctttggataagacgtgtcttgatgtcggacacgtgt-gtgtttgacaccgtcacgacattgatacatataattataatgaat |
547 |
Q |
| |
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|||| |||||| |||||||| |||| ||||||||| || ||||||| | |||| |||| |||||||| || |||| ||| | ||| ||||||| ||||| |
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| T |
5000555 |
caatgaagcacgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgacatgacactgacatataaaattatactgaat |
5000654 |
T |
|
| Q |
548 |
taggtgattttctc |
561 |
Q |
| |
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| ||||||||||| |
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| T |
5000655 |
catgtgattttctc |
5000668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 563
Target Start/End: Original strand, 30982812 - 30982922
Alignment:
| Q |
454 |
aagcacagacactctttggataagacgtgtcttgatgtcggacacgtgt-gtgtttgacaccgtcacgacattgatacatataattataatgaattaggt |
552 |
Q |
| |
|
|||||| |||||||||||||| || |||||| | |||||||||||||| |||| |||||||| ||||||| || || |||||||| | |||| || || |
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| T |
30982812 |
aagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgt |
30982911 |
T |
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| Q |
553 |
gattttctcaa |
563 |
Q |
| |
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||||||||||| |
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| T |
30982912 |
gattttctcaa |
30982922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 568
Target Start/End: Original strand, 9681 - 9796
Alignment:
| Q |
454 |
aagcacagacactctttggataagacgtgtcttgatgtcggacacgtgt-gtgtttgacaccgtcacgacattgatacatataattataatgaattaggt |
552 |
Q |
| |
|
|||||| ||||||| | |||| | ||||||| |||||| |||| |||| |||| ||||||| ||||||| || ||||||||||| | ||||||| || |
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| T |
9681 |
aagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagt |
9780 |
T |
|
| Q |
553 |
gattttctcaacttat |
568 |
Q |
| |
|
||||||||||| |||| |
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| T |
9781 |
gattttctcaaattat |
9796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 568
Target Start/End: Original strand, 24362192 - 24362251
Alignment:
| Q |
509 |
gacaccgtcacgacattgatacatataattataatgaattaggtgattttctcaacttat |
568 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| | ||||||| |||||| |||||| |||| |
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| T |
24362192 |
gacaccgacacgacattgacacatataattacactgaattatgtgattctctcaaattat |
24362251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 568
Target Start/End: Complemental strand, 19206099 - 19206060
Alignment:
| Q |
529 |
acatataattataatgaattaggtgattttctcaacttat |
568 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| |
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| T |
19206099 |
acatataattataatgaattatgtgattttctcaaattat |
19206060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 35297682 - 35297721
Alignment:
| Q |
529 |
acatataattataatgaattaggtgattttctcaacttat |
568 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
35297682 |
acatataattataatgaattatgtgattttctcaaattat |
35297721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 568
Target Start/End: Original strand, 6630872 - 6630961
Alignment:
| Q |
480 |
gtgtcttgatgtcggacacgtgt-gtgtttgacaccgtcacgacattgatacatataattataatgaattaggtgattttctcaacttat |
568 |
Q |
| |
|
|||||||| |||||| ||||||| |||| |||||| |||||||| || ||||||||||| | ||||||| |||| |||||||| |||| |
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| T |
6630872 |
gtgtcttggtgtcgggcacgtgttgtgtccgacaccaacacgacatcgacacatataattacactgaattaagtgactttctcaaattat |
6630961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 568
Target Start/End: Complemental strand, 9828169 - 9828054
Alignment:
| Q |
454 |
aagcacagacactctttggataagacgtgtcttgatgtcggacacgtgt-gtgtttgacaccgtcacgacattgatacatataattataatgaattaggt |
552 |
Q |
| |
|
|||||| ||||||| | |||| ||||||||| | |||||||||||||| |||| |||||| | ||||||| || ||||| ||||| | ||||||| || |
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| T |
9828169 |
aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgt |
9828070 |
T |
|
| Q |
553 |
gattttctcaacttat |
568 |
Q |
| |
|
|||||| |||| |||| |
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| T |
9828069 |
gattttatcaaattat |
9828054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 568
Target Start/End: Complemental strand, 25361955 - 25361896
Alignment:
| Q |
509 |
gacaccgtcacgacattgatacatataattataatgaattaggtgattttctcaacttat |
568 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| | ||||||| ||||||||||||| |||| |
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|
| T |
25361955 |
gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaattat |
25361896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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