View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526-Inserion-6 (Length: 582)
Name: NF4526-Inserion-6
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526-Inserion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 261 - 582
Target Start/End: Complemental strand, 19588265 - 19587944
Alignment:
| Q |
261 |
ggtcacacataagttgaaatatcactattattaacataagtactcttaagtagcaatgtttaaatttggatgtaaattggacttctctgcttggcttgct |
360 |
Q |
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| T |
19588265 |
ggtcacacataagttgaaatatcactattattaacataagtactcttaagtagcaatgtttaaatttggatgcaaattggacttctctgcttggcttgct |
19588166 |
T |
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| Q |
361 |
gcacgtgaattgttcttgaaactgtccaaagaattcttgaagtcttcaagagatgctaaatccatatcatcaatagaattattccaccaatcatgaacat |
460 |
Q |
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| T |
19588165 |
gcacgtaaattattcttgaaactgtccaaagaatttttgaagtcttcaagagatgctaaatccatatcatcaatagaattattccaccaatcatggacat |
19588066 |
T |
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| Q |
461 |
taaaatcactcttctgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattgaagccttagggt |
560 |
Q |
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| T |
19588065 |
taaaatcactcttttgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattgaagccttagggt |
19587966 |
T |
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| Q |
561 |
ttcagcaatgtcatcgtcttct |
582 |
Q |
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| T |
19587965 |
tttagcgatgtcgtcgtcttct |
19587944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 19588424 - 19588366
Alignment:
| Q |
102 |
caatagttgattcacctgtatatatagaaacacctcaatatataaagaaattcgcatgg |
160 |
Q |
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| T |
19588424 |
caatagttgattcacctgaatatatagaaacacctcaatatataaataatttcgcatgg |
19588366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 12895599 - 12895548
Alignment:
| Q |
403 |
tcttcaagagatgctaaatccatatcatcaatagaattattccaccaatcat |
454 |
Q |
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| T |
12895599 |
tcttcaagagatgttaaatccatatcatcaatagatttattccaccaatcat |
12895548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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