View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4526-Inserion-8 (Length: 278)

Name: NF4526-Inserion-8
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4526-Inserion-8
NF4526-Inserion-8
[»] chr4 (22 HSPs)
chr4 (8-233)||(23564189-23564414)
chr4 (172-275)||(23564415-23564518)
chr4 (102-275)||(36165463-36165636)
chr4 (13-221)||(55240376-55240586)
chr4 (126-249)||(9928782-9928909)
chr4 (94-219)||(55240578-55240703)
chr4 (133-229)||(53090027-53090123)
chr4 (130-256)||(23564103-23564227)
chr4 (175-257)||(36165318-36165400)
chr4 (175-256)||(36165751-36165832)
chr4 (102-221)||(1460404-1460523)
chr4 (175-258)||(34542277-34542360)
chr4 (133-219)||(11784979-11785065)
chr4 (104-258)||(53089782-53089935)
chr4 (103-222)||(36165893-36166012)
chr4 (102-235)||(18523214-18523347)
chr4 (203-264)||(23566628-23566689)
chr4 (198-258)||(19680588-19680648)
chr4 (195-229)||(37927662-37927696)
chr4 (8-61)||(2346347-2346400)
chr4 (103-208)||(23564560-23564665)
chr4 (181-221)||(8837128-8837168)
[»] chr7 (10 HSPs)
chr7 (149-243)||(35035269-35035363)
chr7 (103-221)||(41243214-41243332)
chr7 (103-246)||(5473259-5473402)
chr7 (181-258)||(35035084-35035161)
chr7 (107-220)||(2911968-2912081)
chr7 (178-229)||(23972401-23972452)
chr7 (179-264)||(8745733-8745820)
chr7 (8-208)||(8745774-8745978)
chr7 (202-255)||(33804218-33804271)
chr7 (191-219)||(35035507-35035535)
[»] chr3 (17 HSPs)
chr3 (174-275)||(20995638-20995739)
chr3 (103-221)||(30130793-30130911)
chr3 (191-271)||(20982759-20982839)
chr3 (91-210)||(30135501-30135620)
chr3 (91-210)||(30141630-30141749)
chr3 (91-210)||(30145052-30145171)
chr3 (103-219)||(11047446-11047562)
chr3 (175-219)||(50197100-50197144)
chr3 (8-219)||(20490865-20491081)
chr3 (175-221)||(20982648-20982694)
chr3 (193-273)||(20982186-20982267)
chr3 (103-220)||(50196848-50196964)
chr3 (174-258)||(20995343-20995427)
chr3 (139-255)||(22312395-22312511)
chr3 (195-258)||(20491041-20491104)
chr3 (178-221)||(22312214-22312257)
chr3 (179-221)||(20995535-20995577)
[»] chr6 (3 HSPs)
chr6 (103-246)||(10742171-10742315)
chr6 (154-221)||(6728585-6728652)
chr6 (154-220)||(8517094-8517160)
[»] chr5 (7 HSPs)
chr5 (175-257)||(42193326-42193408)
chr5 (107-219)||(6423931-6424044)
chr5 (103-234)||(8402134-8402265)
chr5 (141-219)||(10668493-10668569)
chr5 (126-217)||(42042255-42042346)
chr5 (91-204)||(28431955-28432068)
chr5 (173-221)||(31540298-31540346)
[»] chr2 (5 HSPs)
chr2 (8-209)||(43829724-43829929)
chr2 (149-258)||(43829654-43829764)
chr2 (91-219)||(41470116-41470244)
chr2 (192-222)||(4762537-4762567)
chr2 (187-221)||(36201875-36201909)
[»] scaffold1432 (1 HSPs)
scaffold1432 (91-219)||(933-1061)
[»] chr8 (7 HSPs)
chr8 (103-255)||(30525347-30525497)
chr8 (134-221)||(28883698-28883781)
chr8 (90-221)||(32884525-32884656)
chr8 (198-275)||(42160326-42160403)
chr8 (102-221)||(30525167-30525286)
chr8 (183-221)||(27461254-27461292)
chr8 (179-219)||(12704219-12704259)
[»] scaffold0236 (1 HSPs)
scaffold0236 (102-213)||(22360-22471)
[»] chr1 (10 HSPs)
chr1 (91-250)||(35536770-35536929)
chr1 (139-221)||(10645543-10645625)
chr1 (174-243)||(32968543-32968612)
chr1 (174-254)||(48957774-48957855)
chr1 (141-229)||(28843427-28843515)
chr1 (8-86)||(49293097-49293175)
chr1 (102-167)||(3371645-3371710)
chr1 (224-263)||(10645722-10645761)
chr1 (174-221)||(30602348-30602395)
chr1 (178-219)||(49292960-49293001)
[»] scaffold0557 (3 HSPs)
scaffold0557 (8-86)||(4355-4433)
scaffold0557 (198-256)||(4609-4667)
scaffold0557 (123-251)||(3941-4068)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 23564189 - 23564414
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactcaccttgttaaattgacttgga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23564189 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactgcaatccataacccgactcaccttgttaaattgacttgga 23564288  T
Q  108 tctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactac 207  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23564289 tctcatcccaaatgctaacttaaaagatgaaggttctaaaacatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactac 23564388  T
Q  208 aaacaacttcaaaattaacttccaca 233  Q
    ||||||||||||||||||||||||||    
T  23564389 aaacaacttcaaaattaacttccaca 23564414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 23564415 - 23564518
Alignment:
Q  172 gaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcc 271  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23564415 gaaaacctgatcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcctgagtctgattcc 23564514  T
Q  272 caca 275  Q
    ||||    
T  23564515 caca 23564518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 36165463 - 36165636
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataaca 201  Q
    ||||||||||||||||||  ||| |  ||||||||| |||||| || |||  ||||||||||||||||| |  ||||| ||||||||||||| |  ||||    
T  36165463 cttggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatctttatacactcaacaacccgggaaccttagcaatgtgggactagaaaca 36165562  T
Q  202 aactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccaca 275  Q
    || ||||||||||||||||| ||||||| |||||||| || | |||||||||| ||| |||||| |||||||||    
T  36165563 aattacaaacaacttcaaaactaacttcaacacccactcttatgcctagcgtgagcctgagtctaattcccaca 36165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 55240586 - 55240376
Alignment:
Q  13 caacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc----accttgttaaattgacttggat 108  Q
    |||||||||||  ||||||||| ||||||  | | ||| |||||||||| | | | |||||  |||||||||||    ||| |||||||||| |||| ||    
T  55240586 caacttcaacatccaccctcacgtctagcaagagcttgagtccaattcctacattgcaatctttaacccgactctaataccatgttaaattggcttgaat 55240487  T
Q  109 ctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactaca 208  Q
    ||||||||||| ||||||| ||| ||||| | |||| ||| ||| |||  |||||||||||||||||||||||||||| |   || || |||||||||||    
T  55240486 ctcatcccaaaagctaactcaaaggatgaggatactcaagtatattta--cactcaacaacctgaaaacctgagcaatataaaactaacaacaaactaca 55240389  T
Q  209 aacaacttcaaaa 221  Q
    |||||||| ||||    
T  55240388 aacaactttaaaa 55240376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 9928782 - 9928909
Alignment:
Q  126 cttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaat----aacaaactacaaacaacttcaaaa 221  Q
    ||||||| || | |||||| || |||| ||||||||||||||||| | ||| ||||||||||||||| ||||    ||||||||||||||||||||||||    
T  9928782 cttaaaaaattagggtactcaaacatatttatacactcaacaacccggaaatctgagcaatgtgggataaattaataacaaactacaaacaacttcaaaa 9928881  T
Q  222 ttaacttccacacccaccctcacgccta 249  Q
     ||||||| ||| ||| |||||||||||    
T  9928882 ctaacttcaacatccatcctcacgccta 9928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 55240703 - 55240578
Alignment:
Q  94 taaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggac 193  Q
    ||||| || ||||||||||||||||| |||  || ||||||||| |||||| ||||||| ||||| |||||||| ||||||||| ||||||||  |  ||    
T  55240703 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaagcatatttatatactcaacatcctgaaaacttgagcaatacgaaac 55240604  T
Q  194 aaataacaaactacaaacaacttcaa 219  Q
     || ||||||||||||||||||||||    
T  55240603 taacaacaaactacaaacaacttcaa 55240578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 53090027 - 53090123
Alignment:
Q  133 gatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc 229  Q
    |||||| ||||| ||||||| |||||||||||||| ||||||||| | | ||||||| ||| || ||||||||||||||||||||||||| ||||||    
T  53090027 gatgaatgtactcaagcatatttatacactcaacaccctgaaaacttaaacaatgtgtgactaacaacaaactacaaacaacttcaaaatcaacttc 53090123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 23564103 - 23564227
Alignment:
Q  130 aaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc 229  Q
    |||||||| |||||| |||||||||||||||||||||| |  |||||  | |||||||||||| |||||||||||||||| |||||| ||||  ||||||    
T  23564103 aaagatgagggtactcaagcatacttatacactcaacagca-gaaaat-taagcaatgtgggataaataacaaactacaatcaactttaaaaccaacttc 23564200  T
Q  230 cacacccaccctcacgcctagcgtggg 256  Q
     |||| |||||||||  ||||||||||    
T  23564201 aacactcaccctcacatctagcgtggg 23564227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 36165318 - 36165400
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggc 257  Q
    ||||||||||||||| ||  || ||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  36165318 aacctgagcaatgtgagagtaacaacaaactaaaaacaactttaaaatcaacttcaacacccaccctcacgcctagcgtgggc 36165400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 36165751 - 36165832
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtggg 256  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||||  | |||| || |||||||||||||||||||||||    
T  36165751 aacctaagcaatgtgggactaacaacaaactacaaacaacttcaaaacaaccttcaacgcccaccctcacgcctagcgtggg 36165832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 1460523 - 1460404
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaag-atgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataac 200  Q
    |||||||||||| |||||  ||| || ||| | ||||| ||||| || |||| ||||||||||  ||||| || ||||||||||||||| ||||||||||    
T  1460523 cttggatctcattccaaaaactagctcaaacgtatgaaagtactcaaacatatttatacactcc-caacccgagaacctgagcaatgtgagacaaataac 1460425  T
Q  201 aaactacaaacaacttcaaaa 221  Q
    |||||||||||||||||||||    
T  1460424 aaactacaaacaacttcaaaa 1460404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 34542277 - 34542360
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    |||||||||||| ||||||||| |||||| |||| |||| || ||||| |||||| |||||||| |||| ||||||||||||||    
T  34542277 aacctgagcaatatgggacaaacaacaaattacacacaattttaaaatcaacttcaacacccactctcatgcctagcgtgggcc 34542360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 11785065 - 11784979
Alignment:
Q  133 gatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa 219  Q
    ||||| |||||| || |||| ||||||||||||||  | || |||||||| |||||||||| || ||||||||||||||||||||||    
T  11785065 gatgagggtactcaaacatatttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactacaaacaacttcaa 11784979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 53089782 - 53089935
Alignment:
Q  104 tggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaa 203  Q
    |||||||||||  ||| |||| ||| || ||||| |||||| || |||| ||||||||| ||||  |||  |||||||| || ||||||| || ||||||    
T  53089782 tggatctcatcttaaa-gctagctttaaggatgagggtactcaaacatatttatacacttaacagtctgggaacctgagtaaagtgggactaacaacaaa 53089880  T
Q  204 ctacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    |||||  ||||||||||| || |||| |||| |||||||||  ||||||||||||    
T  53089881 ctacatgcaacttcaaaactaccttcaacacacaccctcacctctagcgtgggcc 53089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 36165893 - 36166012
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    |||||||||||| |||| | || |||||| ||||| ||| || || |||  |||||||||||||| || |||| |||||  |||||| ||| || || ||    
T  36165893 ttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaacatgtttatacactcaacatcccgaaagcctgaataatgtgagactaaaaataa 36165992  T
Q  203 actacaaacaacttcaaaat 222  Q
    ||||||||||||||||||||    
T  36165993 actacaaacaacttcaaaat 36166012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 18523214 - 18523347
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataaca 201  Q
    |||||||||  ||||||| | || || ||| ||||| |||||| || |||| |||||   ||||||||| | ||||||||||||||||||   |  ||||    
T  18523214 cttggatctgctcccaaaagatacctcaaaggatgagggtactcaaacatatttatatgttcaacaacccggaaacctgagcaatgtggggttagaaaca 18523313  T
Q  202 aactacaaacaacttcaaaattaacttccacacc 235  Q
    ||||||||||||||||||||  |||||| |||||    
T  18523314 aactacaaacaacttcaaaaccaacttcaacacc 18523347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 23566628 - 23566689
Alignment:
Q  203 actacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtc 264  Q
    |||||| ||||||||||||  |||||| ||| |||||||||||||||||||||||| |||||    
T  23566628 actacagacaacttcaaaaccaacttcaacatccaccctcacgcctagcgtgggcctgagtc 23566689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 19680588 - 19680648
Alignment:
Q  198 aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    ||||||||||||| ||||| ||||  |||||  ||||||||||||||||||||||||||||    
T  19680588 aacaaactacaaataactttaaaaccaactttaacacccaccctcacgcctagcgtgggcc 19680648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 37927696 - 37927662
Alignment:
Q  195 aataacaaactacaaacaacttcaaaattaacttc 229  Q
    ||||||||||||||||||||||||||| |||||||    
T  37927696 aataacaaactacaaacaacttcaaaactaacttc 37927662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 2346400 - 2346347
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattcc 61  Q
    ||||| ||||||||||| |||||||||| ||||| ||||  |||||||||||||    
T  2346400 aaaacaaacttcaacacccaccctcacacctagcatgggtctgggtccaattcc 2346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 23564560 - 23564665
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||||||| | || || ||| ||||| |||||| ||||||||||  |||||||| |  | |  ||||||  ||||||  ||||||||||||    
T  23564560 ttggatctcatcccaaaagttagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaa 23564659  T
Q  203 actaca 208  Q
    ||||||    
T  23564660 actaca 23564665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 8837128 - 8837168
Alignment:
Q  181 agcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  8837128 agcaatgtgagacaaataacatactacaaataacttcaaaa 8837168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 35035269 - 35035363
Alignment:
Q  149 catacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctca 243  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| |||| ||||||||    
T  35035269 catatttatacactcaacaaactgaaaacctgagcaatgtggaacaaataactaactataaacaactttaaaattaacttcaacacacaccctca 35035363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 41243214 - 41243332
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||||||| | || || ||  ||||| | |||| ||| ||| ||||| |||| ||||||||||||||| |||||| |||||||||||||||    
T  41243214 ttggatctcatcccaaaagttagctcaacggatgaggttactcaagtatatttatagactccacaacctgaaaacctaagcaatatgggacaaataacaa 41243313  T
Q  203 actacaaacaacttcaaaa 221  Q
    |||||||||||| ||||||    
T  41243314 actacaaacaacgtcaaaa 41243332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 5473402 - 5473259
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||| | ||| ||||||||||||||| | |||||| |  |||| ||||||| | | ||||| || ||| |||||||| |   |||||||||||    
T  5473402 ttggatctcattctaaaagctaacttaaaagataagggtactcatacatatttatacatttagcaacccgagaacttgagcaatatataacaaataacaa 5473303  T
Q  203 actacaaacaacttcaaaattaacttccacacccaccctcacgc 246  Q
    |||||||||||||||||||  |||||| ||||||||| ||||||    
T  5473302 actacaaacaacttcaaaaccaacttcaacacccaccttcacgc 5473259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 35035084 - 35035161
Alignment:
Q  181 agcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    ||||||||| ||||||||||||| || ||||||||||||||| |||||| |||||||||||| || ||||||||||||    
T  35035084 agcaatgtgagacaaataacaaattataaacaacttcaaaatcaacttcaacacccaccctcgcgtctagcgtgggcc 35035161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 2911968 - 2912081
Alignment:
Q  107 atctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaacta 206  Q
    |||||||||||||  |||||| ||| |||||||||| | || |||| |||||||||||| | ||    ||||||| | ||||||||||||||||||||||    
T  2911968 atctcatcccaaaccctaactcaaatgatgaaggtattcaaacatatttatacactcaatagcccaggaacctgatccatgtgggacaaataacaaacta 2912067  T
Q  207 caaacaacttcaaa 220  Q
    ||||||||| ||||    
T  2912068 caaacaactccaaa 2912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 23972452 - 23972401
Alignment:
Q  178 ctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc 229  Q
    ||||||||||||||| |||||||||||||||||||| || ||||| ||||||    
T  23972452 ctgagcaatgtgggaaaaataacaaactacaaacaattttaaaatcaacttc 23972401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 8745733 - 8745820
Alignment:
Q  179 tgagcaatgtgggacaaataacaaactaca--aacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtc 264  Q
    |||| ||||| ||| |||||||||||||||  |||||||||||||  |||||  |||| |||||||| ||||||||||| || |||||    
T  8745733 tgagtaatgtaggaaaaataacaaactacacaaacaacttcaaaaccaactttaacactcaccctcatgcctagcgtggccctgagtc 8745820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 8745774 - 8745978
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc----accttgttaaattgact 103  Q
    ||||||||||| ||||||||||||||   |||||||||   || |||||||||  | |||  ||||| |||||| ||||    | | ||||||||   ||    
T  8745774 aaaaccaactttaacactcaccctcatgcctagcgtggccctgagtccaattcacatactggaatccttaacccaactctgatatcatgttaaatgagct 8745873  T
Q  104 tggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaa 203  Q
    |||||||||||||||| | || |||||| ||||| | ||||  | |||| ||||||||||||||  | |  ||||||  |||||| ||||| ||||||||    
T  8745874 tggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagtccgggaacctgtacaatgtaggacacataacaaa 8745973  T
Q  204 ctaca 208  Q
    |||||    
T  8745974 ctaca 8745978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 33804218 - 33804271
Alignment:
Q  202 aactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgg 255  Q
    ||||||||||||||||||||  |||| | |||| ||||||||||| ||||||||    
T  33804218 aactacaaacaacttcaaaaccaactccaacactcaccctcacgcatagcgtgg 33804271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 35035507 - 35035535
Alignment:
Q  191 gacaaataacaaactacaaacaacttcaa 219  Q
    |||||||||||||||||||||||||||||    
T  35035507 gacaaataacaaactacaaacaacttcaa 35035535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 20995739 - 20995638
Alignment:
Q  174 aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattccca 273  Q
    ||||||| |||||||| ||| |||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| ||| |||    
T  20995739 aaacctgtgcaatgtgagacgaataacaacctataaacaacttcaaaactaacttcaacacccaccctcacgcctaacgtgggcccgggtctaatttcca 20995640  T
Q  274 ca 275  Q
    ||    
T  20995639 ca 20995638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 30130793 - 30130911
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    |||||||||||||||||  ||| || ||| ||||||| |||| ||||||| |||||||||||||| ||  | |||||||||||||| ||||| ||| ||     
T  30130793 ttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgtaggacacatatcag 30130892  T
Q  203 actacaaacaacttcaaaa 221  Q
    |||| ||| ||||||||||    
T  30130893 actaaaaataacttcaaaa 30130911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 20982839 - 20982759
Alignment:
Q  191 gacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcc 271  Q
    |||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| ||||||||| ||| | |||| |||||    
T  20982839 gacaaataacaaactacaaacaactttaaaactaacttcaacatccaccctcactcctagcgtgcgcctgggtctaattcc 20982759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 30135501 - 30135620
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| | |||||||||||||||||| | || || ||| ||||| |||||| ||||||| |||||||  ||||| ||| | ||| ||||| || | |    
T  30135501 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30135600  T
Q  191 gacaaataacaaactacaaa 210  Q
    ||||||||||||||||||||    
T  30135601 gacaaataacaaactacaaa 30135620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 30141630 - 30141749
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| | |||||||||||||||||| | || || ||| ||||| |||||| ||||||| |||||||  ||||| ||| | ||| ||||| || | |    
T  30141630 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30141729  T
Q  191 gacaaataacaaactacaaa 210  Q
    ||||||||||||||||||||    
T  30141730 gacaaataacaaactacaaa 30141749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 30145052 - 30145171
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| | |||||||||||||||||| | || || ||| ||||| |||||| ||||||| |||||||  ||||| ||| | ||| ||||| || | |    
T  30145052 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30145151  T
Q  191 gacaaataacaaactacaaa 210  Q
    ||||||||||||||||||||    
T  30145152 gacaaataacaaactacaaa 30145171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 11047562 - 11047446
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||  ||| | || || ||| ||||| |||||| |||| || |||||||||||||| |    |||||||||||||||||||| |  |||||    
T  11047562 ttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtgggactagaaacaa 11047463  T
Q  203 actacaaacaacttcaa 219  Q
    |||||||||||||||||    
T  11047462 actacaaacaacttcaa 11047446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 50197144 - 50197100
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaa 219  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  50197144 aacctgagcaatgtgggacaaataacaaactataaacaacttcaa 50197100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 20491081 - 20490865
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc----accttgttaaattgact 103  Q
    |||||||||||||| || ||||||||| ||||| |||||  ||| ||||||||| | | |  ||||  ||||| | |||    ||| ||||||||   ||    
T  20491081 aaaaccaacttcaatacccaccctcacgtctagtgtgggcctggatccaattcccacattgtaatcattaacctggctctgataccatgttaaatgagct 20490982  T
Q  104 tggatctcatcccaaat-gctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||||||  |||| || |||||| || |||||| ||| ||| |||||||||||||||| ||  ||| |||| ||||| | || ||||||||    
T  20490981 tggatctcatcccaaaaagctagctcaaaagacgagggtactcaagtatatttatacactcaacaacttgggaacttgaggaatgtagaactaataacaa 20490882  T
Q  203 actacaaacaacttcaa 219  Q
    | ||||| |||||||||    
T  20490881 attacaaccaacttcaa 20490865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 20982648 - 20982694
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  20982648 aacctgagcaatgtaggataaataacaaactacaaacaactttaaaa 20982694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 20982186 - 20982267
Alignment:
Q  193 caaataacaaactacaaacaacttcaaaattaacttccacaccca-ccctcacgcctagcgtgggcccgagtctgattccca 273  Q
    ||||||||||||||||||||| || ||||  |||||| ||||||| |||||||| ||||| |||||| |||||  |||||||    
T  20982186 caaataacaaactacaaacaattttaaaaccaacttcaacacccacccctcacggctagcttgggcctgagtccaattccca 20982267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 50196964 - 50196848
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||||||| | || || ||| ||||| |||| | || |||| ||||||||||||||    | |||| |||||||||| ||||||||| |||    
T  50196964 ttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagtacggaaacatgagcaatgt-ggacaaatatcaa 50196866  T
Q  203 actacaaacaacttcaaa 220  Q
    |||| ||| |||||||||    
T  50196865 actagaaataacttcaaa 50196848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 20995343 - 20995427
Alignment:
Q  174 aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    |||||| |||||||| ||||||||||||||| || ||||  || ||||  |||||| |||||||| ||||||| ||| |||||||    
T  20995343 aaacctaagcaatgtaggacaaataacaaacgacgaacatttttaaaaccaacttcaacacccactctcacgcttagtgtgggcc 20995427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 22312511 - 22312395
Alignment:
Q  139 ggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccac 238  Q
    |||||| || |||| |||||||||||||| | || |||| |||| ||||||  || |||||||||||||||| || || ||||  |||||| |||| |||    
T  22312511 ggtactcaaacatatttatacactcaacatcatggaaacatgaggaatgtgaaactaataacaaactacaaataattttaaaaccaacttcaacactcac 22312412  T
Q  239 cctcacgcctagcgtgg 255  Q
     | |||| |||||||||    
T  22312411 tcacacgtctagcgtgg 22312395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 20491104 - 20491041
Alignment:
Q  195 aataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc 258  Q
    |||||||||||| ||| ||||||||||  |||||| | ||||||||||||| |||| |||||||    
T  20491104 aataacaaactaaaaaaaacttcaaaaccaacttcaatacccaccctcacgtctagtgtgggcc 20491041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 22312257 - 22312214
Alignment:
Q  178 ctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||    
T  22312257 ctgagcattgtgagactaataacaaactacaaacaacttcaaaa 22312214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 20995535 - 20995577
Alignment:
Q  179 tgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||||||||||| | ||||||||||||||||||||||| ||||    
T  20995535 tgagcaatgtggaataaataacaaactacaaacaactttaaaa 20995577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 10742315 - 10742171
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaac-ctgaaaacctgagcaatgtgggacaaataaca 201  Q
    ||||||||||||||||| ||||| | ||| ||| | |||||  || |||| ||||||| |||||||| | |  ||||||| |||||||||| ||||||||    
T  10742315 ttggatctcatcccaaaagctaaatcaaatgattagggtacccaaacatatttatacattcaacaactcggggaacctgaacaatgtgggataaataaca 10742216  T
Q  202 aactacaaacaacttcaaaattaacttccacacccaccctcacgc 246  Q
    || ||||||||||||||||| ||||||| |||| |||||||||||    
T  10742215 aaatacaaacaacttcaaaactaacttcaacactcaccctcacgc 10742171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 6728652 - 6728585
Alignment:
Q  154 ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    ||||||||| |||||||  ||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  6728652 ttatacacttaacaacccaaaaacctgaacaatgtgagacaaataacaaactataaacaactttaaaa 6728585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 8517094 - 8517160
Alignment:
Q  154 ttatacactcaacaac-ctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaa 220  Q
    ||||||||||||| || |||||| | ||||||||||||||| ||  ||||||||||||||||||||||    
T  8517094 ttatacactcaactactctgaaa-catgagcaatgtgggactaacgacaaactacaaacaacttcaaa 8517160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 42193326 - 42193408
Alignment:
Q  175 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggc 257  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||  ||||| ||| ||||||||||| |||||||||||    
T  42193326 aacctgagcaatgtgagacaaataacaatctacaagcaacttcaaaatcgacttcaacatccaccctcacgtctagcgtgggc 42193408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 6424044 - 6423931
Alignment:
Q  107 atctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctga-aaacctgagcaatgtgggacaaataacaaact 205  Q
    ||||||||| |||  ||| |||||||||||| | |||| || |||| |||||||||||||| |  || |||| ||| ||||||| |||||||||||||||    
T  6424044 atctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaacagctggagaaacttgaacaatgtgagacaaataacaaact 6423945  T
Q  206 acaaacaacttcaa 219  Q
    ||| ||||||||||    
T  6423944 acagacaacttcaa 6423931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 8402134 - 8402265
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    |||||| |||||||||| | || || ||| || || |||||| || |||| |||||||||| ||| || |||||||||||  |||||| |  || |||||    
T  8402134 ttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatatttatacactcgacagcccgaaaacctgagagatgtggaagtaacaacaa 8402233  T
Q  203 actacaaacaacttcaaaattaacttccacac 234  Q
    |||||||||||||| ||||  |||||| ||||    
T  8402234 actacaaacaactttaaaaccaacttcaacac 8402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 10668569 - 10668493
Alignment:
Q  141 tactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa 219  Q
    |||| ||||||||| |||||||||| | ||||  ||||||||||||||| ||| || ||||||||||||||||||||||    
T  10668569 tactgaagcatact-atacactcaatagcctgggaacctgagcaatgtgagactaa-aacaaactacaaacaacttcaa 10668493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 42042346 - 42042255
Alignment:
Q  126 cttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttc 217  Q
    |||||| ||||||| |||| || |||| ||||||||||||||  |||  |||||  |||||||| ||| || ||||||||| ||||||||||    
T  42042346 cttaaatgatgaagatactcaaacatatttatacactcaacagtctgggaacctttgcaatgtgtgactaacaacaaactataaacaacttc 42042255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 28431955 - 28432068
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| | |||| || |||| ||||| ||||  ||||| ||||| | |||| ||||||| ||||||||||| || ||    ||||| |||||||||     
T  28431955 tgttaaataggcttgaatttcattccaaaagctagtttaaaggatgaggatactcaagcatatttatacactcagcagcccaggaacctaagcaatgtga 28432054  T
Q  191 gacaaataacaaac 204  Q
    ||||||||||||||    
T  28432055 gacaaataacaaac 28432068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 31540298 - 31540346
Alignment:
Q  173 aaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||| |||||||||||| ||| |  ||||||||||||||||||||||||    
T  31540298 aaaatctgagcaatgtgagactagaaacaaactacaaacaacttcaaaa 31540346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 43829724 - 43829929
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc----accttgttaaattgact 103  Q
    ||||||||||||||||| ||||||||| ||||  |||||  ||  ||||| ||| | ||| |||||| |||||||||||    ||| |||| |||   ||    
T  43829724 aaaaccaacttcaacacccaccctcacgtctaatgtgggcctgaatccaactcccacactgcaatccttaacccgactctgataccatgtttaatgagct 43829823  T
Q  104 tggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaa 203  Q
    | |||||||||||||  |||| || ||  ||||| |||||| ||||||| || |||||||||| | |||  ||||||||||||||||||| |  ||||||    
T  43829824 ttgatctcatcccaacagctagctcaatggatgagggtactcaagcatatttctacactcaacgatctgggaacctgagcaatgtgggactagaaacaaa 43829923  T
Q  204 ctacaa 209  Q
    ||||||    
T  43829924 ctacaa 43829929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 43829654 - 43829764
Alignment:
Q  149 catacttatacactcaacaa-cctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcc 247  Q
    |||| ||||||||||||||  || | || ||||| ||||||||||| |  ||||||||||||  ||||||||||  |||||| ||||||||||||||| |    
T  43829654 catatttatacactcaacagtccgggaatcctgaacaatgtgggactagaaacaaactacaaggaacttcaaaaccaacttcaacacccaccctcacgtc 43829753  T
Q  248 tagcgtgggcc 258  Q
    ||  |||||||    
T  43829754 taatgtgggcc 43829764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 41470244 - 41470116
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| ||||||||||||||| |||| ||||  | ||| ||||| |||    | ||| | |||||||| ||||| ||||| ||||||||||| ||||    
T  41470244 tgttaaatggacttggatctcatctcaaaagctagttcaaaggatgagggtgtccaggcagatttatacacccaacatcctgagaacctgagcaacgtgg 41470145  T
Q  191 gacaaataacaaactacaaacaacttcaa 219  Q
    |||   ||| ||||| |||||||||||||    
T  41470144 gactcctaagaaactccaaacaacttcaa 41470116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 4762537 - 4762567
Alignment:
Q  192 acaaataacaaactacaaacaacttcaaaat 222  Q
    |||||||||||||||||||||||||||||||    
T  4762537 acaaataacaaactacaaacaacttcaaaat 4762567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 36201909 - 36201875
Alignment:
Q  187 gtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||||||||||||||||||| ||||||||||||||    
T  36201909 gtgggacaaataacaaactataaacaacttcaaaa 36201875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 933 - 1061
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| |||||  ||||||||||||| ||| ||| ||| ||||| | |||| || |||| ||||||| ||||||||||   | ||||||| || ||     
T  933 tgttaaatagacttaaatctcatcccaaaagctcactcaaaggatgaggatactcaaacatatttatacattcaacaacctatgatcctgagcgatatga 1032  T
Q  191 gacaaataacaaactacaaacaacttcaa 219  Q
    ||| || ||||||||||||||||||||||    
T  1033 gactaacaacaaactacaaacaacttcaa 1061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 30525497 - 30525347
Alignment:
Q  103 ttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa 202  Q
    ||||||||||||| ||| | || || |||||||||||||||| || |||| |||||||||||| | |     ||||||| |||||| |||||||||||||    
T  30525497 ttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaacatatttatacactcaatagctcaggaacctgaacaatgt-ggacaaataacaa 30525399  T
Q  203 actacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgg 255  Q
    |||||  ||||||||||||  ||||||  |||| || |||||| |||||||||    
T  30525398 actac-gacaacttcaaaacgaacttcatcacctactctcacgtctagcgtgg 30525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 28883698 - 28883781
Alignment:
Q  134 atgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||| |||||| || |||| ||||||||| ||||||| ||||||||||||    |||||| || ||||||||||||||||||||||||    
T  28883698 atgagggtactcaaacatatttatacacttaacaacccgaaaacctgagc----tgggactaacaacaaactacaaacaacttcaaaa 28883781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 32884525 - 32884656
Alignment:
Q  90 ttgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtg 189  Q
    ||||||||| | |||| || ||||||||||  |||||||||| ||||| | |||| || |||| ||| |||||  ||| ||    |||||||||||||||    
T  32884525 ttgttaaatagtcttgaatttcatcccaaaaactaacttaaaggatgaggatactcaaacatatttaaacacttgacatcccatgaacctgagcaatgtg 32884624  T
Q  190 ggacaaataacaaactacaaacaacttcaaaa 221  Q
     ||||||||||||||||| ||||  |||||||    
T  32884625 agacaaataacaaactacgaacattttcaaaa 32884656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 42160403 - 42160326
Alignment:
Q  198 aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccaca 275  Q
    ||||||||| ||||||||| ||||  |||||| |||||||||||||||| || ||||||   |||||| |||||||||    
T  42160403 aacaaactataaacaactttaaaaccaacttcaacacccaccctcacgcttatcgtgggtttgagtctaattcccaca 42160326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 30525286 - 30525167
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataaca 201  Q
    |||| ||||||||||||| |||| || |||  ||||  ||||| || |||| ||||||||| ||||||   | ||||| |  ||||| |  |||||||||    
T  30525286 cttgtatctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttatacactaaacaacactagaacctaaataatgtagagcaaataaca 30525187  T
Q  202 aactacaaacaacttcaaaa 221  Q
    ||||||||||||||||||||    
T  30525186 aactacaaacaacttcaaaa 30525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 27461292 - 27461254
Alignment:
Q  183 caatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  27461292 caatgtgggacagataacaaactacatacaacttcaaaa 27461254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 12704259 - 12704219
Alignment:
Q  179 tgagcaatgtgggacaaataacaaactacaaacaacttcaa 219  Q
    ||||| ||||||||| || ||||||||||||||||||||||    
T  12704259 tgagcgatgtgggactaacaacaaactacaaacaacttcaa 12704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 22471 - 22360
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataaca 201  Q
    ||||| |||||||||||| ||||| | ||| |||||||||||| ||||||| ||||||||| |||| || |  ||||| ||| ||||||||| |  ||||    
T  22471 cttggttctcatcccaaaagctaattcaaaggatgaaggtactcaagcatatttatacactgaacatcccgggaacctaagcgatgtgggactagcaaca 22372  T
Q  202 aactacaaacaa 213  Q
    ||||| ||||||    
T  22371 aactagaaacaa 22360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 35536770 - 35536929
Alignment:
Q  91 tgttaaattgacttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgg 190  Q
    |||||||| |||||  ||||||||||||| | ||||| ||| ||||| | ||||  | |||| ||||||| ||||||   ||| ||||| || |||||||    
T  35536770 tgttaaatggacttcaatctcatcccaaaagttaactcaaatgatgaggatacttgaacatatttatacattcaacagtttgagaacctaagtaatgtgg 35536869  T
Q  191 gacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctag 250  Q
     || || |||||||||| |||||||| ||||  |||||| | || |||||||||||||||    
T  35536870 aactaacaacaaactaccaacaactttaaaacgaacttcaatactcaccctcacgcctag 35536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 10645625 - 10645543
Alignment:
Q  139 ggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||||| ||||||| |||||||||||| | |  |  ||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  10645625 ggtactcaagcatatttatacactcaataccgcgggaacctgagcgatgtgggacaaacaacaaactacaaacaacctcaaaa 10645543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 32968543 - 32968612
Alignment:
Q  174 aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctca 243  Q
    |||| |||||||||||| |||||||||||| ||| ||||||||||||| ||| ||| | |||||||||||    
T  32968543 aaacttgagcaatgtggtacaaataacaaattacgaacaacttcaaaactaaattcaaaacccaccctca 32968612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 48957855 - 48957774
Alignment:
Q  174 aaacctgagcaatgtgggacaaataacaaactac-aaacaacttcaaaattaacttccacacccaccctcacgcctagcgtg 254  Q
    ||||||||||||| || ||||||||||||||||| |||||| |||||||  |||||| |||| |||| ||| ||||||||||    
T  48957855 aaacctgagcaatatgtgacaaataacaaactacaaaacaatttcaaaaccaacttcaacacacaccatcatgcctagcgtg 48957774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 28843427 - 28843515
Alignment:
Q  141 tactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc 229  Q
    |||| ||||||| |||||||||||||   | |||||| ||||| |||||  || || ||||||||||||||||||||||||| ||||||    
T  28843427 tactcaagcatatttatacactcaacggtccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaaaatcaacttc 28843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 49293175 - 49293097
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc 86  Q
    ||||||||||||||||||||||||||| |||| | |||| ||| |||||||||| | | | | |||| |||||||||||    
T  49293175 aaaaccaacttcaacactcaccctcacgtctatcatgggtttgagtccaattcccacattgcgatccttaacccgactc 49293097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 3371710 - 3371645
Alignment:
Q  102 cttggatctcatcccaaatgctaacttaaaagatgaaggtactaaagcatacttatacactcaaca 167  Q
    |||||||||||||||||| |||| || ||||||||| |||||| ||||||   |||||||||||||    
T  3371710 cttggatctcatcccaaaagctacctcaaaagatgagggtactcaagcatgtgtatacactcaaca 3371645  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 10645761 - 10645722
Alignment:
Q  224 aacttccacacccaccctcacgcctagcgtgggcccgagt 263  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  10645761 aacttcaacacccaccctcacgcctagcgtgggcctgagt 10645722  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 30602395 - 30602348
Alignment:
Q  174 aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 221  Q
    |||| |||| ||||||  ||||||||||||||||||||||||||||||    
T  30602395 aaacttgagtaatgtgaaacaaataacaaactacaaacaacttcaaaa 30602348  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 49293001 - 49292960
Alignment:
Q  178 ctgagcaatgtgggacaaataacaaactacaaacaacttcaa 219  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  49293001 ctgagcaatgtgggactagaaacaaactacaaacaacttcaa 49292960  T

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Target: scaffold0557 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 4433 - 4355
Alignment:
Q  8 aaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactacaatccataacccgactc 86  Q
    |||||||||||| |||| ||||||||   |||||||| |||||||| ||||||||| | | |||||  |||||||||||    
T  4433 aaaaccaacttcgacacacaccctcatgcctagcgtgagattgggttcaattccaacattgcaatctttaacccgactc 4355  T

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Target: scaffold0557; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 4667 - 4609
Alignment:
Q  198 aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtggg 256  Q
    ||||||||||||||||||||||||  |||||| ||| | ||||||| || |||||||||    
T  4667 aacaaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtggg 4609  T

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Target: scaffold0557; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 3941 - 4068
Alignment:
Q  123 taacttaaaagatgaaggtactaaagcatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaat 222  Q
    ||||||||| ||||| |||||| || |||| || |||| |||||| || || | ||||  ||||||| ||| |  || ||| |||||||||||||||||     
T  3941 taacttaaaggatgagggtactcaaacatatttgtacattcaacagcccgaga-cctgcacaatgtgagactagaaataaattacaaacaacttcaaaac 4039  T
Q  223 taacttccacacccaccctcacgcctagc 251  Q
      | ||| |||||||||||||||||||||    
T  4040 ctatttcaacacccaccctcacgcctagc 4068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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