View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4526_high_3 (Length: 292)

Name: NF4526_high_3
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4526_high_3
NF4526_high_3
[»] chr7 (1 HSPs)
chr7 (20-98)||(35130512-35130590)
[»] chr3 (10 HSPs)
chr3 (20-98)||(52737921-52737998)
chr3 (18-98)||(27825784-27825864)
chr3 (21-98)||(10511120-10511196)
chr3 (20-98)||(35240245-35240322)
chr3 (24-98)||(10514448-10514521)
chr3 (20-98)||(33785764-33785834)
chr3 (13-55)||(782925-782967)
chr3 (21-56)||(4607445-4607480)
chr3 (21-100)||(40131902-40131980)
chr3 (21-51)||(10661850-10661880)
[»] chr4 (1 HSPs)
chr4 (29-98)||(21214886-21214954)
[»] chr1 (4 HSPs)
chr1 (18-98)||(9905881-9905961)
chr1 (18-98)||(9908272-9908352)
chr1 (25-98)||(29850671-29850743)
chr1 (25-98)||(41418053-41418126)
[»] chr5 (5 HSPs)
chr5 (18-92)||(27405397-27405470)
chr5 (21-56)||(15424614-15424649)
chr5 (21-56)||(41949428-41949463)
chr5 (21-56)||(41951826-41951861)
chr5 (20-98)||(41326293-41326370)
[»] chr2 (3 HSPs)
chr2 (18-98)||(45391919-45391998)
chr2 (21-98)||(27750845-27750921)
chr2 (25-98)||(36316382-36316455)
[»] chr8 (1 HSPs)
chr8 (21-98)||(29908117-29908193)
[»] chr6 (1 HSPs)
chr6 (12-90)||(4555649-4555724)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 35130590 - 35130512
Alignment:
Q  20 acccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35130590 acccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagttaaactatatctctaata 35130512  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 52737921 - 52737998
Alignment:
Q  20 acccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  52737921 acccactaatggggtggttacaactatatatactactctaggactaatac-tacttgaagctaaactatatctctaata 52737998  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 27825784 - 27825864
Alignment:
Q  18 tgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |   ||||||||| ||||||||||||||||||    
T  27825784 tgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagttaaactatatctctaata 27825864  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 10511120 - 10511196
Alignment:
Q  21 cccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||| ||| |||||| | |||||||||||||||||||    
T  10511120 cccactaatggggtggttacaactatatatattactatagaactaatac-tacttgtaactaaactatatctctaata 10511196  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 35240322 - 35240245
Alignment:
Q  20 acccactaatggggtggttacaactatatatactactctaggactagtactta-cttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| | | |||  |||||||||||||||||||    
T  35240322 acccactaatggggtggttacaactatatatactactctagaactaatactaaccgtga--ctaaactatatctctaata 35240245  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 10514448 - 10514521
Alignment:
Q  24 actaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||| || ||| | ||||| |||||||||||||    
T  10514448 actaatggggtggttacaactatatatactactatagaactaatac-tatttgtaactaaattatatctctaata 10514521  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 33785834 - 33785764
Alignment:
Q  20 acccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||||||| ||||||  |||||     ||||||||| |||||||||||||||||||||||||||    
T  33785834 acccactaatggggtggttacaattatata--ctact-----actagtact-acttgaagctaaactatatctctaata 33785764  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 782925 - 782967
Alignment:
Q  13 aaaagtgacccactaatggggtggttacaactatatatactac 55  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  782925 aaaagtgtcccacttatggggtggttacaactatatatactac 782967  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 4607480 - 4607445
Alignment:
Q  21 cccactaatggggtggttacaactatatatactact 56  Q
    |||||||||||||| |||||||||||||||||||||    
T  4607480 cccactaatggggttgttacaactatatatactact 4607445  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 40131980 - 40131902
Alignment:
Q  21 cccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaatact 100  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| || | | | |||| | ||||||||||| |||||||||    
T  40131980 cccactaatagggtgattacaactatatatactactataggattaatgc-tgcttgtaactaaactatatttctaatact 40131902  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 10661850 - 10661880
Alignment:
Q  21 cccactaatggggtggttacaactatatata 51  Q
    |||||||||||||||||||||||||||||||    
T  10661850 cccactaatggggtggttacaactatatata 10661880  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 21214954 - 21214886
Alignment:
Q  29 tggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  21214954 tggggtggttacaactatatatactactataggactagtac-tacttgaagctaaactatatctctaata 21214886  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9905881 - 9905961
Alignment:
Q  18 tgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |   ||||||||||||||||||||||||||||    
T  9905881 tgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagctaaactatatctctaata 9905961  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9908272 - 9908352
Alignment:
Q  18 tgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |   ||||||||||||||||||||||||||||    
T  9908272 tgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagctaaactatatctctaata 9908352  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 29850671 - 29850743
Alignment:
Q  25 ctaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||||||||||||||||||||||||| ||  | || ||| |||||| | |||||||||||||||||||    
T  29850671 ctaatggggtggttacaactatatatactactataaaattaatac-tacttgtaactaaactatatctctaata 29850743  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 41418126 - 41418053
Alignment:
Q  25 ctaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||| |||||||| |||||||||||||||| || ||||||| || ||| | | ||||  |||||||||||||    
T  41418126 ctaatgaggtggttagaactatatatactactttatgactagtgctaactagtatctaacatatatctctaata 41418053  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27405397 - 27405470
Alignment:
Q  18 tgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatct 92  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27405397 tgacccattaatgaggtgattacaactatatatactactctaggactagtac-tacttgaagctaaactatatct 27405470  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 15424614 - 15424649
Alignment:
Q  21 cccactaatggggtggttacaactatatatactact 56  Q
    |||||||||||||| |||||||||||||||||||||    
T  15424614 cccactaatggggttgttacaactatatatactact 15424649  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 41949428 - 41949463
Alignment:
Q  21 cccactaatggggtggttacaactatatatactact 56  Q
    |||||||||||||| |||||||||||||||||||||    
T  41949428 cccactaatggggttgttacaactatatatactact 41949463  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 41951826 - 41951861
Alignment:
Q  21 cccactaatggggtggttacaactatatatactact 56  Q
    |||||||||||||| |||||||||||||||||||||    
T  41951826 cccactaatggggttgttacaactatatatactact 41951861  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 41326293 - 41326370
Alignment:
Q  20 acccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||||| |||||||||| ||||||||||||  | ||||| ||| || |||   |||||||||||||||||||    
T  41326293 acccactaatgggatggttacaaccatatatactactacaagactaatac-taattgtgtctaaactatatctctaata 41326370  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 45391919 - 45391998
Alignment:
Q  18 tgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||   |||||||||||||||||||    
T  45391919 tgacccactaatggggtggttacaactatatatactactctaggactaatac-taattgtgactaaactatatctctaata 45391998  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 27750845 - 27750921
Alignment:
Q  21 cccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||| |  ||||||||||||||||||    
T  27750845 cccactaatgaggtggttacaactatatatactactataggactaatac-tacttgtaagtaaactatatctctaata 27750921  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 36316382 - 36316455
Alignment:
Q  25 ctaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    |||||| ||||||||||||||||||||||||| ||  |||||| || ||| | | ||||  |||||||||||||    
T  36316382 ctaatgaggtggttacaactatatatactactatataactagtgctaactagtatctaacatatatctctaata 36316455  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 29908117 - 29908193
Alignment:
Q  21 cccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatatctctaata 98  Q
    ||||||||||  ||||||||||||||||| |||||| |||||||| ||| |||||| | |||| ||||||||||||||    
T  29908117 cccactaatgaagtggttacaactatatacactactataggactaatac-tacttgtaactaacctatatctctaata 29908193  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 4555724 - 4555649
Alignment:
Q  12 gaaaagtgacccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagctaaactatat 90  Q
    |||||||  |||||| ||| |||||||||||||||||||||||  | ||||||||||| |||||| | |||||||||||    
T  4555724 gaaaagtatcccacttatgaggtggttacaactatatatacta--ccaggactagtac-tacttgtaactaaactatat 4555649  T

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