View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526_low_1 (Length: 619)
Name: NF4526_low_1
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 32315249 - 32314825
Alignment:
| Q |
4 |
gaagatttttaataggaagaacattcgaaaagaggatttattataaaacaataacaacatcaaagtgaattgtttnnnnnnnn---------tcaaagtg |
94 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32315249 |
gaagatttttaataggaagaacatttgaaaagaggatttattataaaacaataacaacatcaaagtgaattgtttgtaaaaaaaataaaaaatcaaagtg |
32315150 |
T |
|
| Q |
95 |
aattgagcaattgaaatttatgaaatcactcacaaaaggatgaagtgatataacaaaattcaaaagtagttgatgaagacatacatacccatgtga---- |
190 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
32315149 |
aattgagctgctaaaatttgtgaaatcactcacaaaaggatgaattactataacaaaacccaaaagcagttgatgaagacatacatacccatgtgatttt |
32315050 |
T |
|
| Q |
191 |
--agtaggcaagatcagcaagctggataaacaagtgaacaagaaactgtcaaccttagggcacaaaatatatcatttgaagagagtaagaaatgtaccaa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32315049 |
gaagtaggcaagatcagcaagctggataaacaagtgaactagaaactgtcaaccttagggcacaaaatatatcatttgaagagagtaagaaatgtactaa |
32314950 |
T |
|
| Q |
289 |
gtttaccactcaaaataatgatagaacaaaccacctcttttcaataagtacaatttctcaagactaatgaaattcacttaccatttaataaacaaaataa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314949 |
gtttaccactcaaaataatgatagaacaaaccacctcttttcaataagtacaatttctcaagactaatgaaattcacttaccatttaataaacaaaataa |
32314850 |
T |
|
| Q |
389 |
cacagcatagtaatctataattcct |
413 |
Q |
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|||||| |||||| ||||||||||| |
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| T |
32314849 |
cacagcttagtaacctataattcct |
32314825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32364867 - 32365115
Alignment:
| Q |
1 |
gcggaagatttttaataggaagaacattcgaaaagaggatttattataaaacaataacaacatcaaagtgaattgtttnnnnnnnntcaaa--------- |
91 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
32364867 |
gcggaagatttttaataggaagaacatttgaaaagaggattttttataaaacaataacaacatcaaagtgaattgtttgacaaaaaaaaaaaaaaaaaaa |
32364966 |
T |
|
| Q |
92 |
-gtgaattgagcaattgaaatttatgaaatcactcacaaaaggatgaagtgatataacaaaattcaaaagtagttgatgaagacatacatacccatgtga |
190 |
Q |
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| T |
32364967 |
agtgaattgagcaactaaaatttgtgaaatcactcacaaaaggatgaattgatataacaaa-ttcaaaagtagttgatgaagacatacatacccatgtga |
32365065 |
T |
|
| Q |
191 |
agtaggcaagatcagcaagctggataaacaagtgaacaagaaactgtcaa |
240 |
Q |
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| T |
32365066 |
agcaggcaagatcagcaagctggataaacaagtgaacaagaaaatgtcaa |
32365115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 32308737 - 32308802
Alignment:
| Q |
2 |
cggaagatttttaataggaagaacattcgaaaagaggatttattataaaacaataacaacatcaaa |
67 |
Q |
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|||||||||||||||||||| || ||| || |||||||||||||||||||||||||||| |||||| |
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| T |
32308737 |
cggaagatttttaataggaaaaatatttgataagaggatttattataaaacaataacaaaatcaaa |
32308802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 32308827 - 32308862
Alignment:
| Q |
155 |
caaaagtagttgatgaagacatacatacccatgtga |
190 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
32308827 |
caaaagcagttgatgaagacatacatacccatgtga |
32308862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 32314806 - 32314774
Alignment:
| Q |
414 |
gatgccagatgtgattaccaaaaataagttcaa |
446 |
Q |
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| T |
32314806 |
gatgccagatgtgattaccaaagataagttcaa |
32314774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 602
Target Start/End: Complemental strand, 27645307 - 27645234
Alignment:
| Q |
529 |
tcacattttaatatgtaaaccagttagaatgtaacatgtgtcaccttttaatttgtatgtcaatcatatgtttt |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
27645307 |
tcacattttaatatgtaaaccagttagaatgtaacatgtgtcaccttttaatttgtaagcaaatcatatgtttt |
27645234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 576
Target Start/End: Complemental strand, 19891772 - 19891730
Alignment:
| Q |
534 |
ttttaatatgtaaaccagttagaatgtaacatgtgtcaccttt |
576 |
Q |
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| T |
19891772 |
ttttaatatgtaaaccaattataatgtaacatgtgtcaacttt |
19891730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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