View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526_low_6 (Length: 251)
Name: NF4526_low_6
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 33709677 - 33709898
Alignment:
| Q |
20 |
accaggaaatagccaatgaggaaagcataaatggataattccatggcatagttcttgtacagtataagactccagattccactcacaagactacaaattg |
119 |
Q |
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| T |
33709677 |
accaggaaatagccaatgaggaaagcataaatggataattccatggcatagttcttgtacagtataagactccagattccactcacaagactacaaattg |
33709776 |
T |
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| Q |
120 |
cacctactgcaacaccactaagaaaacagaatgcaccagtgagatccaaatctatcaattcctctaatccaactctaatgaacatgtcccaagtatcaga |
219 |
Q |
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| T |
33709777 |
cacctactgcaacaccactaagaaaacagaatgcaccagtgagatccaaatctatcaattcctctaatccaactctaatgaacatgtcccaagtatcaga |
33709876 |
T |
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| Q |
220 |
agatgcttgcacaaaccctttg |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
33709877 |
agatgcttgcacaaaccctttg |
33709898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 9544898 - 9544690
Alignment:
| Q |
32 |
ccaatgaggaaagcataaatggataattccatggcatagttcttgtacagtataagactccagattccactcacaagactacaaattgcacctactgcaa |
131 |
Q |
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| T |
9544898 |
ccaatgaggaaaccataaatggacaattcagtagcatagttcttgtctaacacaatgctccaaattccactcactaggctactaattgcacccccagcca |
9544799 |
T |
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| Q |
132 |
caccactaagaaaacagaatgcaccagtgagatccaaatctatcaattcctctaatccaactctaatgaacatgtcccaagtatcagaagatgcttgcac |
231 |
Q |
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| T |
9544798 |
ctccactaaagaagcaaaatgatccagtgagatccaagtctataagttgcaccaatccaaccctattaaaaatgtcccaagtatcacatgatgcttgcac |
9544699 |
T |
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| Q |
232 |
aaacccttt |
240 |
Q |
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| T |
9544698 |
aaacccttt |
9544690 |
T |
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