View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4526_low_7 (Length: 221)
Name: NF4526_low_7
Description: NF4526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4526_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2796378 - 2796159
Alignment:
| Q |
1 |
cccgcataacaacatccggtgctaaaccatacagagaaggattccttgacatacgcacgtacaagtaagtgtatccgatccaattgcaagcttccttcgc |
100 |
Q |
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| T |
2796378 |
cccgcataacaacatccggtgctaaaccatacagagaaggattccttgacatacgcacgtacaagtaagtgtatccgatccaattgcaagcttccttcgc |
2796279 |
T |
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| Q |
101 |
attttgaacggtaccgagaacaatttccgcattcagctgatcggccagcttggaaataaactggctctcaataggaagttgttgattcataagagagaga |
200 |
Q |
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| T |
2796278 |
attttgaacggtaccgagaacaatttccgcattcagctgatcggccagcttggaaataaactggctctcaataggaagttgttgattcataagagagaga |
2796179 |
T |
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| Q |
201 |
taatactgcaactcactatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2796178 |
taatactgcaactcactatg |
2796159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 29263880 - 29263675
Alignment:
| Q |
12 |
acatccggtgctaaaccatacagagaaggattccttgacatacgcacgtacaagtaagtgtatccgatccaattgcaagcttccttcgcattttgaacgg |
111 |
Q |
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| T |
29263880 |
acatctggtgctaacccgtaaagagacggattcctcaacatgcgaacatacaggtacgtgtatccaatccaatgacaggcttcctttgcattctgaactg |
29263781 |
T |
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| Q |
112 |
taccgagaacaatttccgcattcagctgatcggccagcttggaaataaactggctctcaataggaagttgttgattcataagagagagataatactgcaa |
211 |
Q |
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| T |
29263780 |
taccgagaacaatctctgcattcagctgatcagccagcttggaaataaactggctctcgatgggaagttgttggttcattagagagaggtaatattgcaa |
29263681 |
T |
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| Q |
212 |
ctcact |
217 |
Q |
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|||||| |
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| T |
29263680 |
ctcact |
29263675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 29188951 - 29189031
Alignment:
| Q |
90 |
gcttccttcgcattttgaacggtaccgagaacaatttccgcattcagctgatcggccagcttggaaataaactggctctca |
170 |
Q |
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| T |
29188951 |
gcttccttcacattttgaactgtaccgagaacaatctctgcattcagctgatcagctagcttagaaataaactgactctca |
29189031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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