View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4527-Insertion-1 (Length: 590)
Name: NF4527-Insertion-1
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 341 - 589
Target Start/End: Original strand, 258058 - 258306
Alignment:
| Q |
341 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcacgtggaattt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
258058 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
258157 |
T |
|
| Q |
441 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258158 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
258257 |
T |
|
| Q |
541 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
589 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
258258 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
258306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 341 - 589
Target Start/End: Complemental strand, 657863 - 657615
Alignment:
| Q |
341 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcacgtggaattt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
657863 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
657764 |
T |
|
| Q |
441 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657763 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
657664 |
T |
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| Q |
541 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
589 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
657663 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
657615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 341 - 589
Target Start/End: Complemental strand, 843598 - 843350
Alignment:
| Q |
341 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcacgtggaattt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
843598 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
843499 |
T |
|
| Q |
441 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843498 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
843399 |
T |
|
| Q |
541 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
589 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
843398 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
843350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 256944 - 257194
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
256944 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
257043 |
T |
|
| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
217 |
Q |
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| T |
257044 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
257135 |
T |
|
| Q |
218 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
257136 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
257194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 658976 - 658726
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
658976 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
658877 |
T |
|
| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
658876 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
658785 |
T |
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| Q |
218 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
658784 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
658726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 844712 - 844462
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
844712 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
844613 |
T |
|
| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
844612 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
844521 |
T |
|
| Q |
218 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
844520 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
844462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 257237 - 257203
Alignment:
| Q |
297 |
ttctcttagcctaattaatttgatgacccaataag |
331 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
257237 |
ttctcttagcctaattaatgtgatgacccaataag |
257203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 658683 - 658717
Alignment:
| Q |
297 |
ttctcttagcctaattaatttgatgacccaataag |
331 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
658683 |
ttctcttagcctaattaatgtgatgacccaataag |
658717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 844419 - 844453
Alignment:
| Q |
297 |
ttctcttagcctaattaatttgatgacccaataag |
331 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
844419 |
ttctcttagcctaattaatgtgatgacccaataag |
844453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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