View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4527-Insertion-2 (Length: 349)
Name: NF4527-Insertion-2
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 7375705 - 7375343
Alignment:
| Q |
8 |
atcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375705 |
atcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
7375606 |
T |
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| Q |
108 |
caccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatc |
207 |
Q |
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||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7375605 |
cactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatc |
7375506 |
T |
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| Q |
208 |
cttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatccacac |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |||| |
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| T |
7375505 |
cttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacac |
7375406 |
T |
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| Q |
287 |
tttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctcca |
349 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375405 |
tttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctcca |
7375343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 7278134 - 7278496
Alignment:
| Q |
8 |
atcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7278134 |
atcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagctgctc |
7278233 |
T |
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| Q |
108 |
caccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatc |
207 |
Q |
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||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7278234 |
cactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatc |
7278333 |
T |
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| Q |
208 |
cttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatccacac |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |||| |
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| T |
7278334 |
cttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacac |
7278433 |
T |
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| Q |
287 |
tttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctcca |
349 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278434 |
tttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctcca |
7278496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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