View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4527_high_1 (Length: 214)
Name: NF4527_high_1
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 30701469 - 30701654
Alignment:
| Q |
14 |
tctttactaccttaaaactatcttagagtaacacactataactacaaggttcatgagattagagtaattaaattaaattatattatagagtgccaacata |
113 |
Q |
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| T |
30701469 |
tctttactaccttaaaactatcttagagtaacacaccataactacaaggttcatgagattagagaaattaaattaaattatatcatagagtgccaacata |
30701568 |
T |
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| Q |
114 |
ataaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgt |
199 |
Q |
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| T |
30701569 |
ataaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgt |
30701654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 30736585 - 30736769
Alignment:
| Q |
15 |
ctttactaccttaaaactatcttagagtaacacactataactacaaggttcatgagattagagtaattaaattaaattatattatagagtgccaacataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30736585 |
ctttactaccttaaaactatcttagagtaacacaccataactacaaggttcatgagattagagaaattaaattaaattatattatagagtgccaacataa |
30736684 |
T |
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| Q |
115 |
taaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgt |
199 |
Q |
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| T |
30736685 |
taaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtattatgt |
30736769 |
T |
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