View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4527_low_1 (Length: 392)
Name: NF4527_low_1
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 53658052 - 53657696
Alignment:
| Q |
1 |
tcaacaaccaaaagtaaaaaacgggcnnnnnnnactccagacaaatcttcaattcaattcaaagttcatgcaaagcttcttcaccatgctctgcccctac |
100 |
Q |
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| T |
53658052 |
tcaacaaccaaaagtaaaaaacgggctttttttactccagacaaatcttcaattcaattcaaagttcatgcaaagcttcttaaccatgctctgcccctac |
53657953 |
T |
|
| Q |
101 |
accgtacaaccgcgccaaatctaaccaattcaccacttttcatcctaataataataataatcaacattattaatacagttgatccagttggtaagaagtc |
200 |
Q |
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| T |
53657952 |
accgtacaaccgcgccaaatctaaccaattcaccacttttcatcctaataataataat---caacattattaaaacagttgatccagttggtaagaagtc |
53657856 |
T |
|
| Q |
201 |
gaatgataaagacctcattagtgcgcgacgggtaaatatctttgtctctgatcattgatgtatctgagggactcaacttatctgaacttttaattagcaa |
300 |
Q |
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| T |
53657855 |
cagtgataaagacctcgttagtgcgcgacgggtaaatatctttgtctctgatcattgatgtatctgagggactcaacttatctgaacttttaattagcaa |
53657756 |
T |
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| Q |
301 |
taaaaacaaaataatcaacggttcccacagaatcatcatcactaattattctaacacatt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657755 |
taaaaacaaaataatcaacggttcccacagaatcatcatcactaattattctaacacatt |
53657696 |
T |
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