View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4527_low_2 (Length: 349)
Name: NF4527_low_2
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 53658360 - 53658031
Alignment:
| Q |
21 |
aaatagataaaatgatagaagagaggagaggaagtatataatatac--gctgacaaaaacaagttgactggaaaagttacacnnnnnnnnnnnncacgga |
118 |
Q |
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| T |
53658360 |
aaatagataaaatgatagaagggaggagaggaagtatataatatataagctgacaaaaacaagttgactggaaaagttacacaaaaaagaaaaacacgga |
53658261 |
T |
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| Q |
119 |
tacagagatacagctggagaaaaggagtggcaccccatccaataggaatggggaaagagatccgtgatcccattagaaaaagacactttcttttttctca |
218 |
Q |
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| T |
53658260 |
tacagagatacagctggagaaaaggagtggcaccccatccaataggaatggggaaagagatccgtgatcccattagaaaaagacactttcttttttctca |
53658161 |
T |
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| Q |
219 |
aaatagatttcaatcaaacagtgaaatatgattcattttacagtacagattctaattctacaccagattaaatactatcaatatcaactaaaaaagcccg |
318 |
Q |
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| T |
53658160 |
aaatagatttcaatcaaacagtgaaatatgattcattttacagtacagattctaattctacaccagatt-aataatatcaatatcaactaaaaaagcccg |
53658062 |
T |
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| Q |
319 |
ctcctttcttcaacaaccaaaagtaaaaaac |
349 |
Q |
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| T |
53658061 |
ctcctttcttcaacaaccaaaagtaaaaaac |
53658031 |
T |
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