View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4527_low_3 (Length: 281)
Name: NF4527_low_3
Description: NF4527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4527_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 1717696 - 1717455
Alignment:
| Q |
27 |
actttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttaca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717696 |
actttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttaca |
1717597 |
T |
|
| Q |
127 |
gatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1717596 |
gatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatga |
1717497 |
T |
|
| Q |
227 |
tgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1717496 |
tgttgtgaggaaatacatcccaaatacttatgtgatcatgtc |
1717455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
| Q |
56 |
aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga |
155 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
1739164 |
aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga |
1739065 |
T |
|
| Q |
156 |
atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt |
255 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1739064 |
atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt |
1738965 |
T |
|
| Q |
256 |
atgtgatgatgtc |
268 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
1738964 |
atgtgatcatgtc |
1738952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
| Q |
92 |
ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct |
190 |
Q |
| |
|
||||||||||| |||| ||||||||| |||| |||| || || ||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
1754300 |
ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct |
1754201 |
T |
|
| Q |
191 |
agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
268 |
Q |
| |
|
||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
1754200 |
agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc |
1754123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
| Q |
143 |
aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| |||||| |
|
|
| T |
1748932 |
aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac |
1748833 |
T |
|
| Q |
243 |
atcccaaatacttatgtgatgatgtc |
268 |
Q |
| |
|
| |||| | |||||||||| ||||| |
|
|
| T |
1748832 |
aacccagaggcttatgtgatcatgtc |
1748807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University