View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528-Insertion-1 (Length: 1182)
Name: NF4528-Insertion-1
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 741; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 13 - 1003
Target Start/End: Complemental strand, 3746968 - 3746014
Alignment:
| Q |
13 |
tgtgtggcagtttttacagcaactgatttgatatagtcgtagcagagagtaaaccggggctgatgggaacatgtttggttaattggtagtggaggataaa |
112 |
Q |
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| T |
3746968 |
tgtgtggcagtttttacagcaactgatttgatatagtcgtagcagagagtaaaccggagctgatgggaacatgtttggttaattggttgtggaggataaa |
3746869 |
T |
|
| Q |
113 |
aatatgatgataggcaagcagggagttgagtgtcctaatgattgatcctgcataattttgcagaaaattaatctttgatttagaagatgtctttagacgt |
212 |
Q |
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| T |
3746868 |
aatatgatgataggcaagcagggagttgagtgtcctaatgattgatcctgcataattttgcagaaaattaatctttgatttagaagatgtctttagacgt |
3746769 |
T |
|
| Q |
213 |
tgcacaaggccaatttggaaagcacataccatgttgtatgccaaaatcgataatcagagatgctgagacatttaatcatctggatgccgcagagtcaagt |
312 |
Q |
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| T |
3746768 |
tgcacaaggccaatttggaaagcacataccttgttgtatgccaaaatcgataatcagagatgctgagacatttaatcatctggatgccgcagagtcaagt |
3746669 |
T |
|
| Q |
313 |
taaagtaaaatggctggatgaggctgcgactaataggacctagtcacagaaaaggatgaatggcgagcaccaatgcacagaacgggtctaggataaggct |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3746668 |
taaagtaaaatggctggatgaggctacgactaataggacctagtcacagaaaaggatgaatggcgagcaccaatgcacagaacgggtctaggataaggct |
3746569 |
T |
|
| Q |
413 |
taggcttgcgtggtaatgaaatttgaagtttttgtaatgatgtgaaatggaagtggtcttgtacgaatttaaagccaaagtttactatctactgaagtat |
512 |
Q |
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| T |
3746568 |
taggcttgcgtggtaatgaaatttgaagtttttgtaatgatgtgaaatggaagtggtcttgtacgaatttaacgccaaagtt---------------taa |
3746484 |
T |
|
| Q |
513 |
atatgctaaatttcttctgtttttgttttatgttccagattatttcatataatctaatcataccagaaaaagaaaatagaatctgaattgcacaaattat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3746483 |
atatgctaaatttcttctgtttttgttttatgttccagattagttcatataatctaatcataccagaaaaagaaaatagaatctgaattgcacaaataat |
3746384 |
T |
|
| Q |
613 |
tcatgtattgcaaataaatcaattgatcattaattaacaataatccaagaagcaactctaaccaaaacaagtacaaaataaataacataaactaacatat |
712 |
Q |
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| T |
3746383 |
taatgtattgcaaataaatcaattgatcattaattaacaataatccaagaagcaactctaaccaaaacaagtacgaaataaa----------taacatat |
3746294 |
T |
|
| Q |
713 |
agcaccacaactacatcctaacaaaagaacatggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtacctct |
812 |
Q |
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| T |
3746293 |
agcaccacaactacatcctagtaaaagaacatggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtacctct |
3746194 |
T |
|
| Q |
813 |
cttgatatcataaagaatc-aacatttgtcaacacccccctataaacttcagtagcacttgaccatcctcaaagatatatactgcctttgggcgcgtaac |
911 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |
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| T |
3746193 |
cttgatatcataaagaatcaaacatttgtcaaca-ccccctataaacttcagtagcacttgaccatcctcaaagatatatactgc--tttggcgcgt-ac |
3746098 |
T |
|
| Q |
912 |
atgaaatttaggttgggttcttggcttggtaaggaatagtcaacagatttaagtccgaggacttcttgctttgcatatcccttcataatcca |
1003 |
Q |
| |
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|||| | |||| | ||||| |||||| ||||||||||||||||| |||| ||||| | ||| ||||||||||||||| ||||||||||||| |
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| T |
3746097 |
atgagaattag--ttggttc-tggctt-gtaaggaatagtcaaca-attt-agtcc-aagac-tcttgctttgcatattccttcataatcca |
3746014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 711 - 777
Target Start/End: Complemental strand, 3754888 - 3754821
Alignment:
| Q |
711 |
atagcaccacaactacatcctaacaaa-agaacatggtgatattaaactctcaacacagacttctgga |
777 |
Q |
| |
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| T |
3754888 |
atagcaccacatctacatcctagcatagagaagatggtgatattaaactttcaccacagacttctgga |
3754821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 713 - 808
Target Start/End: Complemental strand, 11082099 - 11082003
Alignment:
| Q |
713 |
agcaccacaactacatcctaacaaa-agaacatggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtac |
808 |
Q |
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||||||||| ||||||| ||| | | |||||| ||||||| |||||| ||||||||||||||||||| | | |||||| | ||| ||||||||||| |
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| T |
11082099 |
agcaccacatctacatcttaatatagagaacaaggtgatactaaactttcaacacagacttctggaatatctttaaaattattagccttcaaagtac |
11082003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 857 - 899
Target Start/End: Original strand, 1427603 - 1427645
Alignment:
| Q |
857 |
acttcagtagcacttgaccatcctcaaagatatatactgcctt |
899 |
Q |
| |
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| T |
1427603 |
acttcagcagcacttgatcatcctcaaagatatatattgcctt |
1427645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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