View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528-Insertion-3 (Length: 750)
Name: NF4528-Insertion-3
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 10 - 686
Target Start/End: Original strand, 8203443 - 8204119
Alignment:
| Q |
10 |
taaaacgtataaccaaacaagctaatcatcttcaaaagagtacaattttgatttaagcaagatcttttccttggtactagctagatttagcaaactttgg |
109 |
Q |
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| T |
8203443 |
taaaacgtataaccaaacaagctaatcatcttcaaaagagtacaattttgatttaagcaagatcttttccttggtactagctagatttagcaaactttgg |
8203542 |
T |
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| Q |
110 |
atggtcgtgttttcaattttcttgttaatagtgtaatagtccttttgtcttgtaccatgagttgtgtactttgatatgtactttgaatcaatggttccct |
209 |
Q |
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| T |
8203543 |
atggtcgtgttttcaattttcttgttaatagtgtaatagtccttttgtcttgtaccatgagttgtgtactttgatatgtactttgaatcaatggttccct |
8203642 |
T |
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| Q |
210 |
attggcccattgtactctattcaactaa-tttttattaaaataaccatattacttggttaacatctaactgtnnnnnnntatagttgagtatataatcaa |
308 |
Q |
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| T |
8203643 |
attggcccattgtactctattcaactaaatttttattaaaataaccatattacttggttaacatctaactgtaaaaaaatatagttgagtatataatcaa |
8203742 |
T |
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| Q |
309 |
acaagatattattttaaccgagatagacatgcaaagtttatacaagatannnnnnncataggtaagttctgacatgcaatattaaagagatgttttagca |
408 |
Q |
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| T |
8203743 |
acaagatattattttaaccgagatagacatgcaaagtttatacaagatatttttttcataggtaagtcctgacatgcaatattaaagagatgttttagca |
8203842 |
T |
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| Q |
409 |
tcaaggacaagaattgatcatgtgttgtccaagtgggactcatcaatgaataagaaattgaatacttttgtcttagagaaaggagtatgtacgtcacaat |
508 |
Q |
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| T |
8203843 |
tcaaggacaagaattgatcatgtgttgtccaagtgggactcatcaataaataagaaattgaatacttttgtcttagagaaaggaatatgtacgtcacaat |
8203942 |
T |
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| Q |
509 |
gtgagtgcactaatttgctaaccaaaaataacttagtgttgtttgtgagattcttctagagtttgtacgtatgtgttaacttgatgcaacattacattgc |
608 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8203943 |
ttgagagcactaatttgctaaccaaaaataacttagtgttgtttgtgagattcttctagagtttgtacgtatgtgttaacttgatgcaacattacattgc |
8204042 |
T |
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| Q |
609 |
atgtagggatatggggcatgaggggaagctaatatggatggagaagagtacaagataaaaaagttatatataactcta |
686 |
Q |
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| T |
8204043 |
atgtagggatatggggcatga-gggaagctaatatggatggagaagagtacaagataaaaaagttatatataactcta |
8204119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 706 - 750
Target Start/End: Original strand, 8205986 - 8206030
Alignment:
| Q |
706 |
tctactccaaattgaagtactactctaattattataggggtaatg |
750 |
Q |
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| T |
8205986 |
tctactccaaattgaagtactactctaattattataggggtaatg |
8206030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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