View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4528-Insertion-4 (Length: 673)

Name: NF4528-Insertion-4
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4528-Insertion-4
NF4528-Insertion-4
[»] chr8 (4 HSPs)
chr8 (492-673)||(29165828-29166007)
chr8 (83-445)||(29169661-29170032)
chr8 (337-459)||(29167725-29167846)
chr8 (8-67)||(29170098-29170153)
[»] chr3 (3 HSPs)
chr3 (178-231)||(25459578-25459631)
chr3 (135-208)||(21574515-21574589)
chr3 (50-86)||(25867103-25867139)
[»] chr7 (1 HSPs)
chr7 (159-233)||(425769-425844)
[»] chr2 (4 HSPs)
chr2 (176-233)||(32364677-32364734)
chr2 (163-227)||(1801722-1801786)
chr2 (135-231)||(12313121-12313218)
chr2 (174-226)||(40943978-40944030)
[»] chr4 (3 HSPs)
chr4 (134-233)||(19429733-19429833)
chr4 (176-226)||(25717660-25717710)
chr4 (138-226)||(21157796-21157885)
[»] chr6 (2 HSPs)
chr6 (174-232)||(32976043-32976101)
chr6 (174-226)||(283160-283212)
[»] chr5 (2 HSPs)
chr5 (135-208)||(2568683-2568757)
chr5 (137-229)||(28586716-28586809)
[»] chr1 (4 HSPs)
chr1 (135-232)||(31517687-31517785)
chr1 (176-232)||(6031421-6031477)
chr1 (135-190)||(6292518-6292574)
chr1 (575-607)||(18071950-18071982)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 492 - 673
Target Start/End: Complemental strand, 29166007 - 29165828
Alignment:
Q  492 attaccctgtataccatatt-acatgatactgtacaaccatagctaccataattacattatttttaacaagctccatcactttagagcatataaatcata 590  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29166007 attaccctatatactatatttacatgatgctgtacaaccatagctaccataattacattatttttaacaagctc-atcactttagagcatataaatcata 29165909  T
Q  591 tgcatcaatcttgttacttgtattgcttatacaaggacctctcaaaggcttagtgaaaacatctacaaaattgatcatttgaa 673  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  29165908 tgcatcaagcttgttacttgtattgcttatacaaggacctctcaaaggcttagtg-aaacatcta-gaaattgatcatttgaa 29165828  T

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Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 83 - 445
Target Start/End: Complemental strand, 29170032 - 29169661
Alignment:
Q  83 ataaggtcaaactgcttccatgttaagttacaaaatgatttcatacgctaactggagagcttatgcaaatgagctaaaa-tagcttaagaatatgtcata 181  Q
    |||| |||||||||||| | ||| |||||||||| |||||||||| ||||  ||||| ||||||| ||||||||||||| ||||||| | ||||||||||    
T  29170032 ataaagtcaaactgctttcgtgt-aagttacaaagtgatttcataagctacttggagggcttatggaaatgagctaaaaatagcttatggatatgtcata 29169934  T
Q  182 agctgtttttctaagctcttccaaacaattccacaagtgcttatgctagtagtagataagcttnnnnnnngccaatataagcatac----acagagtaaa 277  Q
     ||||||||  |||||||| |||||||||| ||||||||||||||||||||||||| ||||||       | ||||||||||| ||    ||||||||||    
T  29169933 tgctgttttcataagctctcccaaacaatttcacaagtgcttatgctagtagtagacaagctt-aaataagtcaatataagcagaccgtaacagagtaaa 29169835  T
Q  278 agaac-------taaaaagagt---------tgcaaaggaaagaaatagtaacatgctaagggaaccctaagcccttttcatattgattttgtcttgcgt 361  Q
    | |||       ||||||||||         |||||||||||||||||||||| || ||||||||  ||||| ||||||||||||||||||||||||| |    
T  29169834 ataactaacagataaaaagagttaaagacgctgcaaaggaaagaaatagtaacttggtaagggaaaactaag-ccttttcatattgattttgtcttgctt 29169736  T
Q  362 ttcattcatgaaatgcttgcatataaagcatctcaatataaccggaacaagcgtattcagcatttgcctgataacaatgctaaa 445  Q
    ||||||||| || ||||||| |||| || ||||||||||         ||||||||||||||||||||||||||||||||||||    
T  29169735 ttcattcatcaagtgcttgcgtatatagtatctcaatat---------aagcgtattcagcatttgcctgataacaatgctaaa 29169661  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 29167846 - 29167725
Alignment:
Q  337 ttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcatctcaatataaccggaacaagcgtattcagcatttgcctgataac 436  Q
    |||||||||| ||| | |||||| |||||||||| || |||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||||    
T  29167846 ttttcatattcattct-tcttgcttttcattcattaagtgcttgcatatatagcatctcaatataaccggaaccagggtattcaacatttgcctgataac 29167748  T
Q  437 aatgctaaatgaattgtaaaaca 459  Q
    ||||||||| |||||||||||||    
T  29167747 aatgctaaaggaattgtaaaaca 29167725  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 29170153 - 29170098
Alignment:
Q  8 gatgattgtaatgtaatatgactttgattgaataaacatcttacttaattaagcgcttat 67  Q
    ||||||||||||||||||||||| |||||||||| |    | ||||||||||||||||||    
T  29170153 gatgattgtaatgtaatatgactctgattgaataga----taacttaattaagcgcttat 29170098  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 25459631 - 25459578
Alignment:
Q  178 cataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagt 231  Q
    ||||| |||||| ||||||||||||||||||||  |||||||||||||||||||    
T  25459631 cataatctgtttctctaagctcttccaaacaatctcacaagtgcttatgctagt 25459578  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 21574515 - 21574589
Alignment:
Q  135 tggagagcttatgcaaatgagctaaaa-tagcttaagaatatgtcataagctgtttttctaagctcttccaaaca 208  Q
    ||||||||||||| |||| ||||||||  |||||| ||| |||||||||| ||||||  |||||||| |||||||    
T  21574515 tggagagcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaaca 21574589  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 25867139 - 25867103
Alignment:
Q  50 acttaattaagcgcttatgtataagttctttctataa 86  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  25867139 acttaattaagcgcttatgtatacgttatttctataa 25867103  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 425844 - 425769
Alignment:
Q  159 aaatagcttaagaatatgtcataagctgtttttc-taagctcttccaaacaattccacaagtgcttatgctagtag 233  Q
    |||||||||| ||| ||||||||||||||||||| |||| ||| ||||||| | ||||| |||||||||| |||||    
T  425844 aaatagcttatgaacatgtcataagctgtttttcgtaagttctcccaaacagtgccacatgtgcttatgccagtag 425769  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 32364734 - 32364677
Alignment:
Q  176 gtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagtag 233  Q
    ||||||||||| |||| |||||||| |||||||||| ||||| |||||||| ||||||    
T  32364734 gtcataagctggttttataagctctcccaaacaatttcacaaatgcttatgatagtag 32364677  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 1801722 - 1801786
Alignment:
Q  163 agcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgc 227  Q
    |||||| ||| |||||||||||||||||  |||| ||| |||||||||  |||||||||||||||    
T  1801722 agcttatgaacatgtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatgc 1801786  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 12313218 - 12313121
Alignment:
Q  135 tggagagcttatgcaaatgagctaaaat-agcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagt 231  Q
    ||||||||||||| |||| || | |||| | |||| ||| ||| |||||||||||||  |||  ||| |||||||||  |||||||||||||||||||    
T  12313218 tggagagcttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttttcataaattctcccaaacaatctcacaagtgcttatgctagt 12313121  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 40943978 - 40944030
Alignment:
Q  174 atgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatg 226  Q
    |||||||||||||||||  ||| || ||||||||| || ||||||||||||||    
T  40943978 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 40944030  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 19429733 - 19429833
Alignment:
Q  134 ctggagagcttatgcaaatgagct-aaaatagcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagta 232  Q
    |||||||||||||| |||| |||| |||| |||||| |   |||| || |||||||||| |||| |||||||||||||  |||| |||||||||| ||||    
T  19429733 ctggagagcttatggaaataagctgaaaacagcttatggcaatgtaatgagctgtttttgtaagatcttccaaacaatctcacatgtgcttatgcgagta 19429832  T
Q  233 g 233  Q
    |    
T  19429833 g 19429833  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 25717660 - 25717710
Alignment:
Q  176 gtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatg 226  Q
    |||||||| |||||   ||||||||||||||||||| ||||||||||||||    
T  25717660 gtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatg 25717710  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 21157796 - 21157885
Alignment:
Q  138 agagcttatgcaaatgagctaaaat-agcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatg 226  Q
    |||||||||| |||| ||||||||  |||||  | | |||||||||||||||| | |||||||||||||||| |   |||||||||||||    
T  21157796 agagcttatggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatg 21157885  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 32976043 - 32976101
Alignment:
Q  174 atgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagta 232  Q
    |||||||||||||||| | |||||||||||||||| |  ||||||| ||||||| ||||    
T  32976043 atgtcataagctgtttctataagctcttccaaacagtctcacaagtacttatgccagta 32976101  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 283160 - 283212
Alignment:
Q  174 atgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatg 226  Q
    |||||||||||||||||| || | || |||||||| || ||||||||||||||    
T  283160 atgtcataagctgtttttatacgttcctccaaacagtttcacaagtgcttatg 283212  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 2568683 - 2568757
Alignment:
Q  135 tggagagcttatgcaaatgagctaaaa-tagcttaagaatatgtcataagctgtttttctaagctcttccaaaca 208  Q
    ||||||||| ||| |||| |||||||| || |||| |||||||||||||||||||||  |||| ||||| |||||    
T  2568683 tggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttcttctaaaca 2568757  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 28586809 - 28586716
Alignment:
Q  137 gagagcttatgcaaatgagct-aaaatagcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgcta 229  Q
    ||||||||||  |||| |||| |||| |||||| | |||||||||||||| |||   |||||||| ||||||| || ||||| |||||||||||    
T  28586809 gagagcttatcgaaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatgcta 28586716  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 31517785 - 31517687
Alignment:
Q  135 tggagagcttatgcaaatgagct-aaaatagcttaagaatatgtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagta 232  Q
    ||||||||||||| |||| |||| |||| |||||| ||| ||||||| || ||||||  |||| ||| ||||||| |  ||||||||||||||| ||||    
T  31517785 tggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagta 31517687  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 6031477 - 6031421
Alignment:
Q  176 gtcataagctgtttttctaagctcttccaaacaattccacaagtgcttatgctagta 232  Q
    |||||||||||||||  |||||||||| ||||| |  ||||||||||||||| ||||    
T  6031477 gtcataagctgttttcataagctcttctaaacattcgcacaagtgcttatgccagta 6031421  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 6292518 - 6292574
Alignment:
Q  135 tggagagcttatgcaaatgagct-aaaatagcttaagaatatgtcataagctgtttt 190  Q
    ||||||||||||| |||| |||| |||| |||||| ||| |||||||||||||||||    
T  6292518 tggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt 6292574  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 607
Target Start/End: Original strand, 18071950 - 18071982
Alignment:
Q  575 gagcatataaatcatatgcatcaatcttgttac 607  Q
    |||||||||||||||||||||||| ||||||||    
T  18071950 gagcatataaatcatatgcatcaagcttgttac 18071982  T

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