View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528-Insertion-6 (Length: 558)
Name: NF4528-Insertion-6
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 18110080 - 18110415
Alignment:
| Q |
8 |
gacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctcaaa |
107 |
Q |
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| T |
18110080 |
gacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctcaaa |
18110179 |
T |
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| Q |
108 |
agggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtcaaa |
207 |
Q |
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| T |
18110180 |
agggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtcaaa |
18110279 |
T |
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| Q |
208 |
accaacatctatagagagaaccaaaacacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaa |
307 |
Q |
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| T |
18110280 |
accaacatctatagagagaaccaaagcacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaa |
18110379 |
T |
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| Q |
308 |
gaaaatttagaggaaaagatagtaggaatgagtgct |
343 |
Q |
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| T |
18110380 |
gaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 405 - 558
Target Start/End: Original strand, 18110477 - 18110630
Alignment:
| Q |
405 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
504 |
Q |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
505 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctac |
558 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctac |
18110630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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