View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4528-Insertion-7 (Length: 492)

Name: NF4528-Insertion-7
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4528-Insertion-7
NF4528-Insertion-7
[»] chr5 (2 HSPs)
chr5 (10-285)||(25381943-25382219)
chr5 (285-370)||(25382512-25382597)
[»] chr2 (4 HSPs)
chr2 (10-285)||(38252760-38253036)
chr2 (10-285)||(43156506-43156782)
chr2 (285-342)||(38252412-38252468)
chr2 (285-342)||(43157074-43157130)
[»] chr1 (6 HSPs)
chr1 (10-285)||(11473830-11474106)
chr1 (10-253)||(28245962-28246206)
chr1 (121-285)||(50019513-50019678)
chr1 (288-370)||(50019058-50019139)
chr1 (285-342)||(11474398-11474454)
chr1 (286-342)||(28245597-28245652)
[»] chr6 (4 HSPs)
chr6 (10-285)||(19307622-19307898)
chr6 (10-159)||(10124077-10124226)
chr6 (286-370)||(19307246-19307329)
chr6 (285-342)||(10123824-10123880)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 25381943 - 25382219
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25381943 ttaaagcggcaactgaagcatcacccgaggaagaatggctcaagtttcttgataatggtgtagatgacatgttcaagaaaataattgaatttcgggcaca 25382042  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||| ||||| |||||||| |||||||||||||    
T  25382043 agctatggacaataacggtgataatggtgctcgtccagaaattgtgagttcgaatgttatgcaagcaaaggggttcaaggtacgacccggttcaaagcga 25382142  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25382143 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaaaag 25382219  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 25382512 - 25382597
Alignment:
Q  285 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| || || |||||||||||    
T  25382512 gggggccaacctatttgaatggaatgaatgcataggggggcactagcactgttgcattcatgaaagtgtagcaattgtttttgctg 25382597  T

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Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 38253036 - 38252760
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38253036 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgacatgttcaagaaaataattgaacttcggacaca 38252937  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || |  ||||||||| |||||||||||||| |||||||||||||    
T  38252936 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcga 38252837  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38252836 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 38252760  T

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Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 43156506 - 43156782
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  43156506 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgacatgttcaagaaaataattgaacttcggacaca 43156605  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || |  ||||||||| |||||||||||||| |||||||||||||    
T  43156606 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcga 43156705  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43156706 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 43156782  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 38252468 - 38252412
Alignment:
Q  285 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 342  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  38252468 gggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 38252412  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 43157074 - 43157130
Alignment:
Q  285 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 342  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  43157074 gggggccaacctatttgaatggaatgaatgcata-gggggcactggcgttgctgcatt 43157130  T

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Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 11473830 - 11474106
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  11473830 ttaaagcggcaactgaagcatcaccaaaggaagaatggctcaagtttcttgataatggtgtagatgacatgttcaagaaaataattgaacttcggacaca 11473929  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || |  ||||||||| |||||||||||||| |||||||||||||    
T  11473930 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcga 11474029  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11474030 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 11474106  T

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Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 28246206 - 28245962
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  28246206 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagaggacatgttcaagaaaataattgaacttcgggcaca 28246107  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || |  ||||||||| ||||||||||| || |||||||||||||    
T  28246106 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacaacccggttcaaagcga 28246007  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgct 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28246006 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgct 28245962  T

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Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 121 - 285
Target Start/End: Complemental strand, 50019678 - 50019513
Alignment:
Q  121 ataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtttta-aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgaca 219  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||| |  ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  50019678 ataacggtgataatggtggtcgttcagaaattgtgagttcagatgttctgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca 50019579  T
Q  220 caaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    |||||||| ||||||||| ||||| |||||||||||||||||  || |||||| ||||||||||||    
T  50019578 caaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaag 50019513  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 50019139 - 50019058
Alignment:
Q  288 ggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 370  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||| ||  |||||| ||||||| ||||||||||||||    
T  50019139 ggccagcctatttgaatggaatgaatgcatag-ggggcacgggcgctgcggctgtcatgacagtgcagcaactgtttttgctg 50019058  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 11474398 - 11474454
Alignment:
Q  285 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 342  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  11474398 gggggccaacctatttgaatggaatgaatgcata-gggggcactggcgttgctgcatt 11474454  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 28245652 - 28245597
Alignment:
Q  286 ggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 342  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  28245652 ggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 28245597  T

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Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 19307898 - 19307622
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  19307898 ttaaagcagcaactgaagcatcacccgaggaagaatggctcaagtttcttgataatggtgtagatgacattttcaagaaaataattgaacttcgggcaca 19307799  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagttcgaatgtt-ttaaagcaaaggagttcagggtacgactcggttcaaagcga 208  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || |  ||||||||| |||||||||||||| |||||||||||||    
T  19307798 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcga 19307699  T
Q  209 attaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 285  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19307698 attaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 19307622  T

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Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 10124226 - 10124077
Alignment:
Q  10 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgatatgttcaagaaaataattgaacttcgggcaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  10124226 ttaaagcggcaactgaagcatcacccaaggaagaatggctcaagtttcttgataatggtgtagatgacatcttcaagaaaataattgaacttcgggcaca 10124127  T
Q  110 agctatggacaataacggtgataatggtgctcgttcagaaattgtgagtt 159  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  10124126 agctatggacaataacggtgataatggtgctcgtccagaagttgtgagtt 10124077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 19307329 - 19307246
Alignment:
Q  286 ggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 370  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  19307329 ggggccaacctatttgaatggaatgaattcataggggg-cactggcgttgctgcattcatgaaagtgcagcaactgtttttgctg 19307246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 10123880 - 10123824
Alignment:
Q  285 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 342  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10123880 gggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 10123824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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