View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528-Insertion-8 (Length: 276)
Name: NF4528-Insertion-8
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528-Insertion-8 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 1355403 - 1355671
Alignment:
| Q |
8 |
tggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1355403 |
tggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattca |
1355502 |
T |
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| Q |
108 |
caatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttc |
207 |
Q |
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| T |
1355503 |
caatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttc |
1355602 |
T |
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| Q |
208 |
ccttcttctcataatcaatatatttattgtgatttttgttttgcgataaaaggttttattttagtttcc |
276 |
Q |
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| T |
1355603 |
ccttcttctcataatcaatatatttattgtgatttttgttttgcaataaaaggttttattttagtttcc |
1355671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 1362289 - 1362465
Alignment:
| Q |
8 |
tggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattca |
107 |
Q |
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| T |
1362289 |
tggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattca |
1362388 |
T |
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| Q |
108 |
caatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaactaagtagact |
184 |
Q |
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| T |
1362389 |
taatcaatatattgatgatctcattgctgctctttacaagtataggaatccttccaattccaacaactaggtagact |
1362465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 20493083 - 20493182
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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| T |
20493083 |
cattgaggttggcaatagtggatgaggaaggaagtatctatagaaaaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaata |
20493182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 11532261 - 11532409
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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| T |
11532261 |
cattgaggttggtaataatggatgaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaata |
11532360 |
T |
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| Q |
117 |
tattgatgactttattgctgctctttacaagtatagggttccttccaat |
165 |
Q |
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| T |
11532361 |
cattgaagattttattgttgctcttcaaaagtatagagttcattccaat |
11532409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 12846926 - 12847066
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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|||||||||| ||||| |||||| ||||||| || || ||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| |
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| T |
12846926 |
cattgaggttagcaataatggatgccgaaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaata |
12847025 |
T |
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| Q |
117 |
tattgatgactttattgctgctctttacaagtatagggttc |
157 |
Q |
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| T |
12847026 |
cattgaagatttcattgctgctcttcaaaagtatagggttc |
12847066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 14589371 - 14589470
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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| T |
14589371 |
cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 14623029 - 14623128
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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| T |
14623029 |
cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 29954948 - 29955088
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagta-gtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaat |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||| || || |||| ||||| ||||| ||| ||||||||||||||||||||| |||||||| ||| |
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| T |
29954948 |
cattgaggttggcaatagtggatgaggaaggaagtatgtatc-ggaataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaat |
29955046 |
T |
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| Q |
116 |
atattgatgactttattgctgctctttacaagtatagggttc |
157 |
Q |
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| T |
29955047 |
acattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 51369505 - 51369360
Alignment:
| Q |
17 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
116 |
Q |
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|||||||||||| ||| |||||||||||||| || | | |||||| ||||| ||||| |||| || ||||||||||||||||| ||||||||||||| |
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| T |
51369505 |
cattgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaata |
51369406 |
T |
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| Q |
117 |
tattgatgactttattgctgctctttacaagtatagggttccttcc |
162 |
Q |
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| T |
51369405 |
cattaaagatttaatcgctgctcttcaaaagcatagagttcattcc |
51369360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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