View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528_high_1 (Length: 565)
Name: NF4528_high_1
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 453 - 549
Target Start/End: Complemental strand, 1034206 - 1034110
Alignment:
| Q |
453 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaat |
549 |
Q |
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| T |
1034206 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaat |
1034110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 50831828 - 50831970
Alignment:
| Q |
407 |
ttgtaaataacgggataaccagacaaaaatgtcttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtatt |
506 |
Q |
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| T |
50831828 |
ttgtacataatgggacaaccagacaaaaatgtcttgtatagttattttaaatcttggctgagttgtaccagtcaacaagatattaggtatgaactgtatt |
50831927 |
T |
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| Q |
507 |
ttcacaaggaaactaaagaaaatgtaactgaaaacatataaat |
549 |
Q |
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| T |
50831928 |
ttcaccaggaaacttgagaaaatgtaactgaaaatatataaat |
50831970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 440 - 549
Target Start/End: Complemental strand, 4515883 - 4515774
Alignment:
| Q |
440 |
ttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaa |
539 |
Q |
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| T |
4515883 |
ttatatggtcattttaaatattggctgagttgtcccagtcaacaagacattaggtttgaactttattttcaccgggaaactaaagaaaatgtaactgaaa |
4515784 |
T |
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| Q |
540 |
acatataaat |
549 |
Q |
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| T |
4515783 |
acatataaat |
4515774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 50831010 - 50831125
Alignment:
| Q |
107 |
aagcactcccctccgtctttgacttggctacatagccttcgacacttagaacggtactactgaaatattaagaacactgtaattcaaggtaatgtcatgc |
206 |
Q |
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| T |
50831010 |
aagcactccccttggtctttgacttggcgacatagccatcgacactttgaaccgtacttccgaaatattaaggacactgtaattgaaggtaatgtcatgc |
50831109 |
T |
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| Q |
207 |
agtttctaaaagccca |
222 |
Q |
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| T |
50831110 |
agtttctaaaagccca |
50831125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 50831176 - 50831228
Alignment:
| Q |
266 |
ttggatcaactgatgcggcagtagtttgatattcataaagcccactgagcttc |
318 |
Q |
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| T |
50831176 |
ttggatcaactgatgcggcagtagtttgagattcagaaagcctaccgagcttc |
50831228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 50831502 - 50831554
Alignment:
| Q |
316 |
ttctgacacaactctctgagacctgagtagaactggcgttagagtcaatggta |
368 |
Q |
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| T |
50831502 |
ttctgacacaactctctgaggcctgaatagaactggtgttggagttaatggta |
50831554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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